Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AC011352.2-201ENST00000514574 1016 ntBASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 AC087672.3-201ENST00000519323 738 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 CARSP2-201ENST00000520688 277 ntBASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 AC103831.1-201ENST00000522228 422 ntTSL 3 BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 LINC01146-206ENST00000556684 361 ntTSL 3 BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 AC025040.1-201ENST00000560375 1284 ntTSL 2 BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 RPGRIP1L-208ENST00000566096 893 ntTSL 2 BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 AC008752.2-201ENST00000591174 750 ntTSL 3 BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 PLEKHA3P1-201ENST00000598554 894 ntBASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 AL450226.2-201ENST00000622913 439 ntBASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 AC069542.2-201ENST00000624816 216 ntBASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 MBD5-221ENST00000637159 902 ntTSL 5 BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 ZNF519-207ENST00000590202 2830 ntAPPRIS P1 TSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 AL133243.4-201ENST00000623116 3109 ntBASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 AP000547.3-204ENST00000588548 2523 ntBASIC8.18□□□□□ -1.1
CHMP4CQ96CF2 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 MEF2C-249ENST00000637481 6088 ntTSL 5 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 FGF1-213ENST00000610990 3802 ntAPPRIS P1 TSL 4 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 CAGE1-203ENST00000379918 2877 ntAPPRIS ALT2 TSL 5 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 RNU4-23P-201ENST00000362839 140 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC083799.1-201ENST00000366451 910 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC092634.1-201ENST00000366505 199 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 TSACC-201ENST00000368251 438 ntAPPRIS P1 TSL 3 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 KCND3-AS1-202ENST00000427471 583 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC007365.2-201ENST00000428806 458 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC004039.1-201ENST00000431165 502 ntTSL 5 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC106874.1-201ENST00000440495 646 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 PPP1R2P6-201ENST00000478565 588 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 RPL23AP80-201ENST00000495605 424 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 CCNHP1-201ENST00000513311 678 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AP003467.1-201ENST00000517397 301 ntTSL 5 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC113191.1-201ENST00000517759 403 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC104109.4-202ENST00000518409 1082 ntTSL 2 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC023866.2-201ENST00000521378 387 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 HNRNPRP2-201ENST00000528421 743 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 PPIAP14-201ENST00000577627 496 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC024267.2-201ENST00000582737 417 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 AC005520.3-201ENST00000602874 370 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 MTCO1P1-201ENST00000624263 1081 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 FO082842.1-201ENST00000423552 1370 ntBASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 CA1-222ENST00000523953 2785 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC8.17□□□□□ -1.1
CHMP4CQ96CF2 MAPK10-287ENST00000641217 3037 ntBASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 AC110597.1-201ENST00000562669 3176 ntBASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 PLN-201ENST00000357525 2001 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 ATP5EP2-201ENST00000381026 385 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 AC017035.1-201ENST00000411999 1115 ntBASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 NPM1P36-201ENST00000415681 835 ntBASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 KCND3-AS1-201ENST00000419258 383 ntTSL 3 BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 MAP3K20-AS1-203ENST00000423106 2538 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 LINC00575-201ENST00000426551 910 ntTSL 1 (best) BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 AL445218.1-202ENST00000427695 845 ntTSL 3 BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 LINC00687-201ENST00000427835 558 ntTSL 3 BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 AL096803.1-201ENST00000456921 1021 ntBASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 OR52A4P-202ENST00000481634 799 ntBASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 AC096743.1-201ENST00000485172 319 ntBASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 AC009567.2-201ENST00000502989 349 ntBASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 AC021220.1-201ENST00000507445 630 ntBASIC8.16□□□□□ -1.1
CHMP4CQ96CF2 DCAF13P2-201ENST00000514188 555 ntBASIC8.16□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms