Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC036214.3-201ENST00000522938 1527 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 OAS2-201ENST00000342315 3613 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AL359694.2-201ENST00000567753 1615 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 GDA-209ENST00000545168 5362 ntTSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 AC013488.1-201ENST00000526618 1838 ntBASIC5.88□□□□□ -1.47
NKX3-1Q99801 MAPK10-207ENST00000395166 3085 ntAPPRIS P2 TSL 2 BASIC5.88□□□□□ -1.47
NKX3-1Q99801 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 AC105749.1-201ENST00000631338 2008 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 ZNF426-202ENST00000535489 2375 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
NKX3-1Q99801 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
NKX3-1Q99801 RASGRF1-201ENST00000394745 2850 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
NKX3-1Q99801 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 MIR27A-201ENST00000385073 78 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
NKX3-1Q99801 AC235097.1-201ENST00000412163 681 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
NKX3-1Q99801 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 OR52S1P-201ENST00000427016 937 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 SDHC-204ENST00000432287 460 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
NKX3-1Q99801 RPS10P14-201ENST00000440748 502 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 AL136455.1-201ENST00000441083 1240 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 AC092801.1-201ENST00000443763 581 ntTSL 3 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 MTCO3P17-201ENST00000443775 513 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 RN7SL456P-201ENST00000469290 295 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 AL591122.1-201ENST00000487348 492 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 RNA5SP116-201ENST00000516132 98 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 FAM30C-201ENST00000561158 410 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 AC018558.5-201ENST00000565840 952 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 PRR13P5-201ENST00000596581 442 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 AL953862.2-201ENST00000603089 820 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 AC016590.3-201ENST00000611171 753 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 5S_rRNA.23-201ENST00000612086 102 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 NDFIP2-203ENST00000487865 1384 ntTSL 2 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 AC093227.1-201ENST00000588040 1360 ntTSL 3 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 AC015969.1-201ENST00000366218 1416 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
NKX3-1Q99801 AL592430.1-202ENST00000414383 1546 ntTSL 3 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 AP000641.1-201ENST00000531988 1639 ntBASIC5.87□□□□□ -1.47
NKX3-1Q99801 MED31-201ENST00000225728 1654 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
NKX3-1Q99801 CYP2C8-201ENST00000371270 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
NKX3-1Q99801 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 RNF145-211ENST00000521606 2658 ntTSL 2 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC5.87□□□□□ -1.47
NKX3-1Q99801 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
NKX3-1Q99801 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 KLHL5-201ENST00000261425 3425 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 LINC01876-209ENST00000638047 1983 ntTSL 5 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 BCO2-214ENST00000532593 1647 ntTSL 2 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 LINC01991-202ENST00000446091 1524 ntTSL 2 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 OR52A1-201ENST00000328942 939 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 NUDT5-202ENST00000378937 919 ntTSL 3 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 RPL31-202ENST00000409000 641 ntTSL 2 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 TEX38-202ENST00000415500 566 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 VDAC1P10-201ENST00000416715 891 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 AL161742.1-201ENST00000418154 584 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 OR13C7-201ENST00000424348 959 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC011753.2-201ENST00000425576 610 ntTSL 5 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 TPTE2P1-204ENST00000435256 593 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 LINC01393-202ENST00000435981 1187 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC007278.2-201ENST00000436582 1200 ntTSL 3 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AL022157.1-201ENST00000439622 665 ntTSL 2 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AL392046.1-201ENST00000450742 569 ntTSL 5 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 LINC01431-203ENST00000452395 505 ntTSL 2 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC019080.2-201ENST00000453859 394 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 RPL36AP55-201ENST00000454114 305 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 GAPDHP53-201ENST00000458397 924 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 RPS10P28-201ENST00000480396 498 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 RN7SL776P-201ENST00000493390 268 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 RN7SL187P-201ENST00000495587 303 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC087752.2-201ENST00000521219 281 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 SLC25A51P2-201ENST00000535708 889 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC084033.1-201ENST00000550830 633 ntBASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC015914.1-201ENST00000558050 1072 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC5.86□□□□□ -1.47
NKX3-1Q99801 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC5.86□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms