Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC079594.1-201ENST00000489757 331 ntBASIC5.67□□□□□ -1.5
CDX1P47902 RPS26P24-201ENST00000497656 331 ntBASIC5.67□□□□□ -1.5
CDX1P47902 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC5.67□□□□□ -1.5
CDX1P47902 CHCHD2P7-201ENST00000508008 452 ntBASIC5.67□□□□□ -1.5
CDX1P47902 MAPK10-223ENST00000511167 1265 ntTSL 5 BASIC5.67□□□□□ -1.5
CDX1P47902 RN7SKP67-201ENST00000515905 235 ntBASIC5.67□□□□□ -1.5
CDX1P47902 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.67□□□□□ -1.5
CDX1P47902 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 NF1P12-201ENST00000549593 583 ntBASIC5.67□□□□□ -1.5
CDX1P47902 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
CDX1P47902 DYNLRB2-204ENST00000562982 492 ntTSL 3 BASIC5.67□□□□□ -1.5
CDX1P47902 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC5.67□□□□□ -1.5
CDX1P47902 ZNF730-201ENST00000593635 464 ntTSL 3 BASIC5.67□□□□□ -1.5
CDX1P47902 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC5.67□□□□□ -1.5
CDX1P47902 FAM205C-203ENST00000603640 1017 ntAPPRIS P4 TSL 5 BASIC5.67□□□□□ -1.5
CDX1P47902 AC090953.1-201ENST00000604305 1092 ntBASIC5.67□□□□□ -1.5
CDX1P47902 GMCL1P2-201ENST00000605230 823 ntBASIC5.67□□□□□ -1.5
CDX1P47902 AC113361.1-201ENST00000606683 543 ntBASIC5.67□□□□□ -1.5
CDX1P47902 HOTTIP_2.1-201ENST00000616633 376 ntBASIC5.67□□□□□ -1.5
CDX1P47902 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC5.67□□□□□ -1.5
CDX1P47902 AC009120.7-201ENST00000623452 780 ntBASIC5.67□□□□□ -1.5
CDX1P47902 AC022743.1-201ENST00000624990 664 ntBASIC5.67□□□□□ -1.5
CDX1P47902 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC5.67□□□□□ -1.5
CDX1P47902 AC017002.5-201ENST00000630717 871 ntTSL 5 BASIC5.67□□□□□ -1.5
CDX1P47902 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CDX1P47902 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 AL591848.4-201ENST00000567832 3472 ntBASIC5.67□□□□□ -1.5
CDX1P47902 AL035563.1-201ENST00000609087 1539 ntBASIC5.67□□□□□ -1.5
CDX1P47902 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
CDX1P47902 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC5.67□□□□□ -1.5
CDX1P47902 TRAF5-202ENST00000336184 3972 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
CDX1P47902 TRDMT1-210ENST00000488990 1301 ntTSL 2 BASIC5.67□□□□□ -1.5
CDX1P47902 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 NACAP1-201ENST00000419462 1555 ntTSL 2 BASIC5.67□□□□□ -1.5
CDX1P47902 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 ACSL4-204ENST00000469796 5225 ntAPPRIS P4 TSL 5 BASIC5.67□□□□□ -1.5
CDX1P47902 LINC01994-201ENST00000496220 1808 ntTSL 2 BASIC5.67□□□□□ -1.5
CDX1P47902 AGBL1-205ENST00000635782 3201 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
CDX1P47902 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 RND3-202ENST00000375734 2777 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CDX1P47902 AC125232.1-201ENST00000452554 1408 ntBASIC5.66□□□□□ -1.5
CDX1P47902 CYP4Z2P-202ENST00000505841 1436 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 LINC02324-201ENST00000531609 1442 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.66□□□□□ -1.5
CDX1P47902 ENPP5-202ENST00000371383 3834 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 MMACHC-203ENST00000616135 1510 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CDX1P47902 OR10A4-201ENST00000379829 995 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CDX1P47902 SNORA70H-201ENST00000383910 135 ntBASIC5.66□□□□□ -1.5
CDX1P47902 SNORA70J-201ENST00000384182 135 ntBASIC5.66□□□□□ -1.5
CDX1P47902 RPS3AP5-201ENST00000389400 821 ntBASIC5.66□□□□□ -1.5
CDX1P47902 S100B-203ENST00000397648 839 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 AL139135.1-201ENST00000412675 209 ntBASIC5.66□□□□□ -1.5
CDX1P47902 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CDX1P47902 AL162582.1-201ENST00000419196 467 ntTSL 3 BASIC5.66□□□□□ -1.5
CDX1P47902 RPL12P43-201ENST00000420608 499 ntBASIC5.66□□□□□ -1.5
CDX1P47902 YY1P1-201ENST00000427625 668 ntBASIC5.66□□□□□ -1.5
CDX1P47902 BMP6P1-201ENST00000431230 679 ntBASIC5.66□□□□□ -1.5
CDX1P47902 HNRNPA1P57-201ENST00000431359 530 ntTSL 4 BASIC5.66□□□□□ -1.5
CDX1P47902 OSTCP2-201ENST00000437956 444 ntBASIC5.66□□□□□ -1.5
CDX1P47902 AL022157.1-201ENST00000439622 665 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 AC079781.1-201ENST00000441505 394 ntBASIC5.66□□□□□ -1.5
CDX1P47902 RPS10P28-201ENST00000480396 498 ntBASIC5.66□□□□□ -1.5
CDX1P47902 CR383656.1-201ENST00000484916 377 ntBASIC5.66□□□□□ -1.5
CDX1P47902 AC018639.1-201ENST00000492994 442 ntBASIC5.66□□□□□ -1.5
CDX1P47902 MRPL57P6-201ENST00000506570 309 ntBASIC5.66□□□□□ -1.5
CDX1P47902 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.66□□□□□ -1.5
CDX1P47902 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC5.66□□□□□ -1.5
CDX1P47902 AC019133.1-201ENST00000508292 420 ntTSL 3 BASIC5.66□□□□□ -1.5
CDX1P47902 AC093815.1-201ENST00000508637 280 ntBASIC5.66□□□□□ -1.5
CDX1P47902 AC139713.1-202ENST00000512366 460 ntBASIC5.66□□□□□ -1.5
CDX1P47902 RPS20-202ENST00000518875 671 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 AC016813.1-201ENST00000521511 735 ntTSL 3 BASIC5.66□□□□□ -1.5
CDX1P47902 OR5M4P-201ENST00000529436 925 ntBASIC5.66□□□□□ -1.5
CDX1P47902 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 NPM1P5-201ENST00000557228 838 ntBASIC5.66□□□□□ -1.5
CDX1P47902 AC011270.1-201ENST00000558606 583 ntBASIC5.66□□□□□ -1.5
CDX1P47902 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC5.66□□□□□ -1.5
CDX1P47902 AC007614.3-201ENST00000564875 654 ntTSL 3 BASIC5.66□□□□□ -1.5
CDX1P47902 AC004494.1-202ENST00000573820 480 ntTSL 4 BASIC5.66□□□□□ -1.5
CDX1P47902 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC5.66□□□□□ -1.5
CDX1P47902 AC011193.2-201ENST00000582638 367 ntBASIC5.66□□□□□ -1.5
CDX1P47902 MAGEB5-201ENST00000602297 1216 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
CDX1P47902 MIR4435-2HG-219ENST00000609220 883 ntTSL 3 BASIC5.66□□□□□ -1.5
CDX1P47902 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.66□□□□□ -1.5
CDX1P47902 AC087633.2-208ENST00000612877 502 ntTSL 5 BASIC5.66□□□□□ -1.5
CDX1P47902 EFCAB8-204ENST00000618684 435 ntTSL 5 BASIC5.66□□□□□ -1.5
CDX1P47902 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CDX1P47902 AC078909.2-201ENST00000620584 398 ntBASIC5.66□□□□□ -1.5
CDX1P47902 SATB1-AS1-242ENST00000627496 807 ntTSL 5 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms