Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Gpr3-202ENSMUST00000105911 2518 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc9Q8VC31 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Ccdc9Q8VC31 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc9Q8VC31 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc9Q8VC31 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc9Q8VC31 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc9Q8VC31 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc9Q8VC31 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc9Q8VC31 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc9Q8VC31 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc9Q8VC31 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Ccdc9Q8VC31 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 C130074G19Rik-201ENSMUST00000048308 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Efcab14-202ENSMUST00000106522 2636 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Zfp212-201ENSMUST00000009411 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Lmcd1-201ENSMUST00000032376 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Ccdc9Q8VC31 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Matk-203ENSMUST00000119547 1916 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Usp31-201ENSMUST00000046929 10198 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Ccdc9Q8VC31 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC20.65■□□□□ 0.9
Ccdc9Q8VC31 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc9Q8VC31 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc9Q8VC31 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc9Q8VC31 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Ccdc9Q8VC31 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Rgs3-201ENSMUST00000065870 4698 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Ccdc9Q8VC31 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc9Q8VC31 Foxp4-201ENSMUST00000097311 3197 ntAPPRIS P4 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc9Q8VC31 Sgk1-202ENSMUST00000092673 2576 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc9Q8VC31 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc9Q8VC31 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC20.63■□□□□ 0.89
Ccdc9Q8VC31 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Ccdc9Q8VC31 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
Ccdc9Q8VC31 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Ccdc9Q8VC31 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc9Q8VC31 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Ccdc9Q8VC31 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC20.63■□□□□ 0.89
Ccdc9Q8VC31 Dennd1a-201ENSMUST00000102787 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms