Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Ushbp1Q8R370 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Bpnt1-202ENSMUST00000110965 1046 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Gm7712-202ENSMUST00000222331 1510 ntBASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Ushbp1Q8R370 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Timm23-208ENSMUST00000226683 750 ntBASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Odf3b-204ENSMUST00000227834 930 ntBASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Ushbp1Q8R370 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Ushbp1Q8R370 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Gm12382-201ENSMUST00000122005 922 ntBASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Gm3375-201ENSMUST00000203929 796 ntBASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Gm4974-201ENSMUST00000209974 875 ntBASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Ushbp1Q8R370 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Ushbp1Q8R370 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms