Protein–RNA interactions for Protein: Q6IRU2

Tpm4, Tropomyosin alpha-4 chain, mousemouse

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm4Q6IRU2 Ctu1-201ENSMUST00000038332 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Tpm4Q6IRU2 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Tpm4Q6IRU2 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Gm37519-201ENSMUST00000191687 2210 ntBASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Fem1b-201ENSMUST00000034775 6785 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Tpm4Q6IRU2 Hoxc4-202ENSMUST00000165375 2121 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Gm27405-201ENSMUST00000184201 112 ntBASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Lrrc7-204ENSMUST00000199890 6326 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Zkscan3-208ENSMUST00000224820 5398 ntBASIC19.19■□□□□ 0.66
Tpm4Q6IRU2 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Tpm4Q6IRU2 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Shank1-201ENSMUST00000107934 6477 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.17■□□□□ 0.66
Tpm4Q6IRU2 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Tpm4Q6IRU2 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Tpm4Q6IRU2 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Tpm4Q6IRU2 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Tpm4Q6IRU2 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Tpm4Q6IRU2 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 39.6 ms