Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col11a1Q61245 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col11a1Q61245 Gm7230-201ENSMUST00000173026 815 ntBASIC19.25■□□□□ 0.67
Col11a1Q61245 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC19.25■□□□□ 0.67
Col11a1Q61245 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col11a1Q61245 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Col11a1Q61245 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Col11a1Q61245 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.25■□□□□ 0.67
Col11a1Q61245 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Col11a1Q61245 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col11a1Q61245 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col11a1Q61245 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC19.24■□□□□ 0.67
Col11a1Q61245 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Col11a1Q61245 CT009713.7-201ENSMUST00000224689 571 ntBASIC19.24■□□□□ 0.67
Col11a1Q61245 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col11a1Q61245 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col11a1Q61245 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col11a1Q61245 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col11a1Q61245 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Col11a1Q61245 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Col11a1Q61245 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col11a1Q61245 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col11a1Q61245 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
Col11a1Q61245 Gm29707-201ENSMUST00000196325 491 ntBASIC19.23■□□□□ 0.67
Col11a1Q61245 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Col11a1Q61245 Psmb5-202ENSMUST00000227257 622 ntBASIC19.23■□□□□ 0.67
Col11a1Q61245 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col11a1Q61245 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col11a1Q61245 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC19.23■□□□□ 0.67
Col11a1Q61245 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col11a1Q61245 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col11a1Q61245 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col11a1Q61245 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col11a1Q61245 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col11a1Q61245 Gm12260-201ENSMUST00000122447 411 ntBASIC19.23■□□□□ 0.67
Col11a1Q61245 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC19.23■□□□□ 0.67
Col11a1Q61245 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC19.23■□□□□ 0.67
Col11a1Q61245 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col11a1Q61245 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Col11a1Q61245 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col11a1Q61245 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.22■□□□□ 0.67
Col11a1Q61245 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col11a1Q61245 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col11a1Q61245 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col11a1Q61245 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col11a1Q61245 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col11a1Q61245 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC19.22■□□□□ 0.67
Col11a1Q61245 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC19.22■□□□□ 0.67
Col11a1Q61245 Gm2213-201ENSMUST00000197485 688 ntBASIC19.22■□□□□ 0.67
Col11a1Q61245 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Col11a1Q61245 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC19.21■□□□□ 0.67
Col11a1Q61245 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
Col11a1Q61245 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Col11a1Q61245 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 Hmbs-201ENSMUST00000077353 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Col11a1Q61245 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
Col11a1Q61245 Gm25990-201ENSMUST00000102440 86 ntBASIC19.21■□□□□ 0.67
Col11a1Q61245 Gm13036-201ENSMUST00000117799 748 ntBASIC19.21■□□□□ 0.67
Col11a1Q61245 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC19.21■□□□□ 0.67
Col11a1Q61245 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.66
Col11a1Q61245 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
Col11a1Q61245 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col11a1Q61245 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Col11a1Q61245 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col11a1Q61245 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Col11a1Q61245 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col11a1Q61245 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col11a1Q61245 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col11a1Q61245 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col11a1Q61245 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC19.2■□□□□ 0.66
Col11a1Q61245 Lmo4-207ENSMUST00000196264 1263 ntTSL 5 BASIC19.2■□□□□ 0.66
Col11a1Q61245 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col11a1Q61245 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Col11a1Q61245 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Col11a1Q61245 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Col11a1Q61245 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col11a1Q61245 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col11a1Q61245 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col11a1Q61245 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col11a1Q61245 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC19.19■□□□□ 0.66
Col11a1Q61245 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.19■□□□□ 0.66
Col11a1Q61245 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col11a1Q61245 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col11a1Q61245 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Col11a1Q61245 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Col11a1Q61245 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC19.18■□□□□ 0.66
Col11a1Q61245 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
Col11a1Q61245 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Col11a1Q61245 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms