Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
Shox2P70390 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Shox2P70390 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Shox2P70390 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Shox2P70390 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Shox2P70390 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Shox2P70390 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Shox2P70390 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Shox2P70390 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
Shox2P70390 Tmem229b-206ENSMUST00000174697 3697 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Shox2P70390 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Shox2P70390 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC17.02■□□□□ 0.32
Shox2P70390 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Shox2P70390 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Shox2P70390 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Shox2P70390 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
Shox2P70390 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.02■□□□□ 0.31
Shox2P70390 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
Shox2P70390 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Shox2P70390 Gm19721-201ENSMUST00000195284 1764 ntBASIC17.02■□□□□ 0.31
Shox2P70390 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Shox2P70390 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC17.02■□□□□ 0.31
Shox2P70390 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Shox2P70390 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC17.01■□□□□ 0.31
Shox2P70390 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC17.01■□□□□ 0.31
Shox2P70390 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
Shox2P70390 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.01■□□□□ 0.31
Shox2P70390 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
Shox2P70390 Gm40848-201ENSMUST00000221998 324 ntBASIC17.01■□□□□ 0.31
Shox2P70390 AC093043.1-201ENSMUST00000226700 898 ntBASIC17.01■□□□□ 0.31
Shox2P70390 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Gm14026-201ENSMUST00000120625 1789 ntBASIC17.01■□□□□ 0.31
Shox2P70390 Nisch-221ENSMUST00000171735 1763 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Shox2P70390 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Aifm1-202ENSMUST00000114945 2221 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Shox2P70390 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Shox2P70390 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
Shox2P70390 Gm8493-201ENSMUST00000196881 489 ntBASIC17■□□□□ 0.31
Shox2P70390 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
Shox2P70390 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC17■□□□□ 0.31
Shox2P70390 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC17■□□□□ 0.31
Shox2P70390 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC17■□□□□ 0.31
Shox2P70390 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Shox2P70390 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC16.99■□□□□ 0.31
Shox2P70390 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
Shox2P70390 Gm14117-201ENSMUST00000122417 843 ntBASIC16.99■□□□□ 0.31
Shox2P70390 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
Shox2P70390 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.99■□□□□ 0.31
Shox2P70390 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC16.99■□□□□ 0.31
Shox2P70390 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC16.99■□□□□ 0.31
Shox2P70390 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
Shox2P70390 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
Shox2P70390 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shox2P70390 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC16.98■□□□□ 0.31
Shox2P70390 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shox2P70390 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shox2P70390 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Shox2P70390 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms