Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 tP(UGG)QtP(UGG)Q 72 nt-0.92□□□□□ -2.56
UPF3P48412 CDC65tQ(CUG)M 72 nt-0.92□□□□□ -2.56
UPF3P48412 YBR223W-AYBR223W-A 120 nt-0.94□□□□□ -2.56
UPF3P48412 YNR077CYNR077C 255 nt-0.95□□□□□ -2.56
UPF3P48412 YDL159W-AYDL159W-A 132 nt-0.98□□□□□ -2.57
UPF3P48412 YDL114W-AYDL114W-A 114 nt-1.01□□□□□ -2.57
UPF3P48412 YGR122C-AYGR122C-A 129 nt-1.01□□□□□ -2.57
UPF3P48412 YDL247W-AYDL247W-A 75 nt-1.03□□□□□ -2.57
UPF3P48412 YMR315W-AYMR315W-A 108 nt-1.04□□□□□ -2.58
UPF3P48412 tV(UAC)QtV(UAC)Q 76 nt-1.06□□□□□ -2.58
UPF3P48412 snR53snR53 91 nt-1.15□□□□□ -2.59
UPF3P48412 snR6snR6 112 nt-1.27□□□□□ -2.61
UPF3P48412 tY(GUA)QtY(GUA)Q 84 nt-1.28□□□□□ -2.61
UPF3P48412 RPL41BYDL133C-A 78 nt-1.31□□□□□ -2.62
UPF3P48412 YOR335W-AYOR335W-A 81 nt-1.34□□□□□ -2.62
UPF3P48412 YOR309CYOR309C 381 nt-1.35□□□□□ -2.63
UPF3P48412 YLR149C-AYLR149C-A 87 nt-1.37□□□□□ -2.63
UPF3P48412 snR73snR73 106 nt-1.44□□□□□ -2.64
UPF3P48412 YKL096C-BYKL096C-B 150 nt-1.62□□□□□ -2.67
UPF3P48412 snR40snR40 97 nt-1.79□□□□□ -2.7
UPF3P48412 YBR126W-BYBR126W-B 144 nt-1.83□□□□□ -2.7
UPF3P48412 snR58snR58 96 nt-1.92□□□□□ -2.72
UPF3P48412 snR87snR87 109 nt-2.09□□□□□ -2.74
UPF3P48412 YDR543CYDR543C 300 nt-2.11□□□□□ -2.75
UPF3P48412 tC(GCA)QtC(GCA)Q 76 nt-2.13□□□□□ -2.75
UPF3P48412 snR75snR75 89 nt-2.14□□□□□ -2.75
UPF3P48412 YOL166W-AYOL166W-A 156 nt-2.36□□□□□ -2.79
UPF3P48412 YJR162CYJR162C 351 nt-3.07□□□□□ -2.9
UPF3P48412 YJL136W-AYJL136W-A 84 nt-3.39□□□□□ -2.95
Retrieved 29 of 7,029 protein–RNA pairs in 263.4 ms