Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 YGL007C-AYGL007C-A 87 nt-2.83□□□□□ -2.86
CUP9P41817 YGR122C-AYGR122C-A 129 nt-2.84□□□□□ -2.86
CUP9P41817 snR61snR61 90 nt-2.89□□□□□ -2.87
CUP9P41817 YDL159W-AYDL159W-A 132 nt-2.9□□□□□ -2.87
CUP9P41817 snR62snR62 100 nt-2.91□□□□□ -2.88
CUP9P41817 YNL103W-AYNL103W-A 90 nt-2.93□□□□□ -2.88
CUP9P41817 Q0032Q0032 291 nt-3.01□□□□□ -2.89
CUP9P41817 snR64snR64 101 nt-3.01□□□□□ -2.89
CUP9P41817 YNL170WYNL170W 396 nt-3.03□□□□□ -2.89
CUP9P41817 snR87snR87 109 nt-3.04□□□□□ -2.9
CUP9P41817 YKL096C-BYKL096C-B 150 nt-3.06□□□□□ -2.9
CUP9P41817 snR58snR58 96 nt-3.23□□□□□ -2.93
CUP9P41817 YLR294CYLR294C 330 nt-3.25□□□□□ -2.93
CUP9P41817 YOR225WYOR225W 330 nt-3.32□□□□□ -2.94
CUP9P41817 YJR162CYJR162C 351 nt-3.33□□□□□ -2.94
CUP9P41817 snR53snR53 91 nt-3.56□□□□□ -2.98
CUP9P41817 YLR149C-AYLR149C-A 87 nt-3.64□□□□□ -2.99
CUP9P41817 YLL066W-BYLL066W-B 171 nt-3.66□□□□□ -3
CUP9P41817 tC(GCA)QtC(GCA)Q 76 nt-3.67□□□□□ -3
CUP9P41817 YMR326CYMR326C 309 nt-3.69□□□□□ -3
CUP9P41817 snR40snR40 97 nt-3.69□□□□□ -3
CUP9P41817 YHR217CYHR217C 462 nt-3.7□□□□□ -3
CUP9P41817 ATP8Q0080 147 nt-3.74□□□□□ -3.01
CUP9P41817 Q0143Q0143 153 nt-3.84□□□□□ -3.02
CUP9P41817 YJL136W-AYJL136W-A 84 nt-4.09□□□□□ -3.06
CUP9P41817 YBL109WYBL109W 336 nt-4.19□□□□□ -3.08
CUP9P41817 Q0092Q0092 141 nt-4.3□□□□□ -3.1
CUP9P41817 YDL247W-AYDL247W-A 75 nt-4.35□□□□□ -3.11
CUP9P41817 snR75snR75 89 nt-4.95□□□□□ -3.2
Retrieved 29 of 7,029 protein–RNA pairs in 34.1 ms