Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC14.15□□□□□ -0.14
Sdc1P18828 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Sdc1P18828 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
Sdc1P18828 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Gm7160-202ENSMUST00000188519 1027 ntBASIC14.14□□□□□ -0.15
Sdc1P18828 Gm5576-201ENSMUST00000075809 1236 ntBASIC14.14□□□□□ -0.15
Sdc1P18828 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC14.14□□□□□ -0.15
Sdc1P18828 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Sdc1P18828 Atxn7-202ENSMUST00000223714 2954 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
Sdc1P18828 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC14.13□□□□□ -0.15
Sdc1P18828 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Sdc1P18828 Gm11421-201ENSMUST00000122124 294 ntBASIC14.13□□□□□ -0.15
Sdc1P18828 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC14.13□□□□□ -0.15
Sdc1P18828 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Sdc1P18828 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Sdc1P18828 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Gm37812-201ENSMUST00000195216 2475 ntBASIC14.13□□□□□ -0.15
Sdc1P18828 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Sdc1P18828 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC14.12□□□□□ -0.15
Sdc1P18828 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC14.12□□□□□ -0.15
Sdc1P18828 Gm42501-201ENSMUST00000200220 1026 ntBASIC14.12□□□□□ -0.15
Sdc1P18828 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Gm36858-201ENSMUST00000194501 2391 ntBASIC14.12□□□□□ -0.15
Sdc1P18828 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC14.12□□□□□ -0.15
Sdc1P18828 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Sdc1P18828 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Sdc1P18828 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms