Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SFTA3-210ENST00000521945 1116 ntTSL 2 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 OR5F2P-201ENST00000532761 941 ntBASIC6.86□□□□□ -1.31
VMP1Q96GC9 AL161747.2-201ENST00000535893 472 ntTSL 5 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 MYL6-211ENST00000548580 528 ntTSL 2 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 CRADD-210ENST00000552033 622 ntTSL 3 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 AC013356.3-201ENST00000558601 584 ntTSL 3 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 AC104581.3-201ENST00000573621 348 ntAPPRIS P1 TSL 5 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 AL365223.1-201ENST00000574864 1297 ntBASIC6.86□□□□□ -1.31
VMP1Q96GC9 AC011483.2-201ENST00000594512 536 ntTSL 4 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 AL583859.2-202ENST00000602311 505 ntTSL 5 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 AL031429.2-201ENST00000602605 649 ntBASIC6.86□□□□□ -1.31
VMP1Q96GC9 AL035417.2-201ENST00000603887 796 ntBASIC6.86□□□□□ -1.31
VMP1Q96GC9 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 FRG2MP-201ENST00000613317 856 ntBASIC6.86□□□□□ -1.31
VMP1Q96GC9 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 AC104073.4-201ENST00000632111 598 ntTSL 2 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
VMP1Q96GC9 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
VMP1Q96GC9 PABPC1P8-201ENST00000452851 2086 ntBASIC6.86□□□□□ -1.31
VMP1Q96GC9 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC6.86□□□□□ -1.31
VMP1Q96GC9 AL136298.2-201ENST00000556497 1570 ntBASIC6.86□□□□□ -1.31
VMP1Q96GC9 AC244502.1-201ENST00000514473 1951 ntTSL 2 BASIC6.86□□□□□ -1.31
VMP1Q96GC9 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
VMP1Q96GC9 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.86□□□□□ -1.31
VMP1Q96GC9 AC005618.1-201ENST00000606901 3148 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 LINC01616-201ENST00000561816 2280 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 ZNF559-ZNF177-203ENST00000541595 2435 ntAPPRIS P3 TSL 2 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 CTSL3P-201ENST00000354530 657 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 PPIAP22-201ENST00000358455 498 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AP001468.1-201ENST00000415026 557 ntTSL 4 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AL354893.1-201ENST00000433735 348 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 PRKAR1AP1-201ENST00000441422 1162 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 AL772337.3-201ENST00000447524 452 ntTSL 3 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 RN7SL152P-201ENST00000484176 298 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC106760.2-201ENST00000504159 619 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC008496.1-201ENST00000509131 295 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC111194.1-201ENST00000509711 422 ntTSL 3 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC068790.1-201ENST00000536166 355 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC023310.2-201ENST00000553844 547 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 ONECUT1-202ENST00000560699 996 ntTSL 3 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC105430.1-202ENST00000567477 483 ntTSL 3 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 DLGAP1-AS3-201ENST00000577649 1258 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AP006587.6-201ENST00000582128 1091 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC011591.1-201ENST00000591379 518 ntTSL 2 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AL589765.5-201ENST00000596133 515 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 STARD13-AS-240ENST00000609608 865 ntTSL 5 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 uc_338.37-201ENST00000620113 186 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC007204.1-201ENST00000621794 555 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC022743.1-201ENST00000624990 664 ntBASIC6.85□□□□□ -1.31
VMP1Q96GC9 SATB1-AS1-242ENST00000627496 807 ntTSL 5 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 ASNS-214ENST00000455086 1588 ntTSL 2 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 ARHGAP20-205ENST00000529591 2623 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AP4E1-203ENST00000560508 6653 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 BPIFC-204ENST00000534972 1809 ntTSL 5 BASIC6.85□□□□□ -1.31
VMP1Q96GC9 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 HEPH-203ENST00000419594 3694 ntTSL 1 (best) BASIC6.85□□□□□ -1.31
VMP1Q96GC9 LINC01722-201ENST00000456265 3033 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 FBXO3-209ENST00000531080 1448 ntTSL 2 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 CCDC77-210ENST00000540180 1652 ntAPPRIS ALT2 TSL 2 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.84□□□□□ -1.31
VMP1Q96GC9 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC6.84□□□□□ -1.31
VMP1Q96GC9 WBP11P1-201ENST00000562560 1931 ntBASIC6.84□□□□□ -1.31
VMP1Q96GC9 AC079178.2-201ENST00000439323 1624 ntBASIC6.84□□□□□ -1.31
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms