Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC16.76■□□□□ 0.27
Msh4Q99MT2 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC16.76■□□□□ 0.27
Msh4Q99MT2 AC108858.1-201ENSMUST00000228461 1498 ntBASIC16.76■□□□□ 0.27
Msh4Q99MT2 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 AC175538.1-201ENSMUST00000225343 1269 ntBASIC16.76■□□□□ 0.27
Msh4Q99MT2 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Gm7292-201ENSMUST00000194706 2527 ntBASIC16.76■□□□□ 0.27
Msh4Q99MT2 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 AC124581.1-201ENSMUST00000225416 1399 ntBASIC16.76■□□□□ 0.27
Msh4Q99MT2 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Ccdc88a-201ENSMUST00000040182 9376 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Msh4Q99MT2 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Eda-204ENSMUST00000113777 1056 ntTSL 5 BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Msh4Q99MT2 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.75■□□□□ 0.27
Msh4Q99MT2 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Msh4Q99MT2 AC166341.7-201ENSMUST00000221698 126 ntBASIC16.75■□□□□ 0.27
Msh4Q99MT2 Eda-201ENSMUST00000071453 1152 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Msh4Q99MT2 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
Msh4Q99MT2 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC16.74■□□□□ 0.27
Msh4Q99MT2 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Msh4Q99MT2 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC16.73■□□□□ 0.27
Msh4Q99MT2 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Msh4Q99MT2 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC16.72■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms