Protein–RNA interactions for Protein: Q8VI40

Trim60, Tripartite motif-containing protein 60, mousemouse

Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim60Q8VI40 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim60Q8VI40 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC17.84■□□□□ 0.45
Trim60Q8VI40 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim60Q8VI40 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.84■□□□□ 0.45
Trim60Q8VI40 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim60Q8VI40 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim60Q8VI40 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim60Q8VI40 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim60Q8VI40 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim60Q8VI40 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim60Q8VI40 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Trim60Q8VI40 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim60Q8VI40 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim60Q8VI40 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim60Q8VI40 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Trim60Q8VI40 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC17.83■□□□□ 0.44
Trim60Q8VI40 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim60Q8VI40 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.83■□□□□ 0.44
Trim60Q8VI40 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim60Q8VI40 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim60Q8VI40 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim60Q8VI40 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim60Q8VI40 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim60Q8VI40 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim60Q8VI40 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Trim60Q8VI40 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
Trim60Q8VI40 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim60Q8VI40 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim60Q8VI40 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim60Q8VI40 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Rrbp1-201ENSMUST00000016072 5177 ntAPPRIS P4 TSL 5 BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC17.82■□□□□ 0.44
Trim60Q8VI40 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim60Q8VI40 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Gm6576-201ENSMUST00000169678 883 ntBASIC17.81■□□□□ 0.44
Trim60Q8VI40 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Dio3-201ENSMUST00000097228 1449 ntBASIC17.81■□□□□ 0.44
Trim60Q8VI40 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim60Q8VI40 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Kcna6-204ENSMUST00000185333 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim60Q8VI40 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.8■□□□□ 0.44
Trim60Q8VI40 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC17.8■□□□□ 0.44
Trim60Q8VI40 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim60Q8VI40 Gm21596-201ENSMUST00000178049 1316 ntBASIC17.79■□□□□ 0.44
Trim60Q8VI40 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim60Q8VI40 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Trim60Q8VI40 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC17.79■□□□□ 0.44
Trim60Q8VI40 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim60Q8VI40 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
Trim60Q8VI40 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim60Q8VI40 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim60Q8VI40 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC17.79■□□□□ 0.44
Trim60Q8VI40 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim60Q8VI40 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim60Q8VI40 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trim60Q8VI40 Gm45560-201ENSMUST00000211492 1472 ntBASIC17.78■□□□□ 0.44
Trim60Q8VI40 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim60Q8VI40 St8sia1-201ENSMUST00000032421 8991 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim60Q8VI40 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.78■□□□□ 0.44
Trim60Q8VI40 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim60Q8VI40 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC17.78■□□□□ 0.44
Trim60Q8VI40 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim60Q8VI40 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim60Q8VI40 Gm7292-201ENSMUST00000194706 2527 ntBASIC17.78■□□□□ 0.44
Trim60Q8VI40 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 63.4 ms