Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 E130307A14Rik-213ENSMUST00000155482 2803 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Ccdc9Q8VC31 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Gm16499-203ENSMUST00000204633 2177 ntBASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Gm6085-201ENSMUST00000182774 1470 ntBASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Ccdc9Q8VC31 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Pim1-201ENSMUST00000024811 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Hps1-201ENSMUST00000026194 2647 ntAPPRIS P3 TSL 5 BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Ccdc9Q8VC31 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Rai1-201ENSMUST00000064190 7348 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Gm37374-201ENSMUST00000194954 1829 ntBASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Tap1-201ENSMUST00000041633 2614 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Ccdc9Q8VC31 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Ccdc9Q8VC31 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Ccdc9Q8VC31 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Ccdc9Q8VC31 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Gm21956-201ENSMUST00000179946 522 ntBASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Ccdc9Q8VC31 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms