Protein–RNA interactions for Protein: Q61164

Ctcf, Transcriptional repressor CTCF, mousemouse

Known RBP Predictions only

Length 736 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CtcfQ61164 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC18.95■□□□□ 0.62
CtcfQ61164 AC164629.5-201ENSMUST00000220387 632 ntBASIC18.95■□□□□ 0.62
CtcfQ61164 AC122769.4-201ENSMUST00000228166 901 ntBASIC18.95■□□□□ 0.62
CtcfQ61164 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
CtcfQ61164 Gm45412-201ENSMUST00000210217 2275 ntBASIC18.95■□□□□ 0.62
CtcfQ61164 Gm10654-201ENSMUST00000098653 1633 ntBASIC18.95■□□□□ 0.62
CtcfQ61164 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
CtcfQ61164 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
CtcfQ61164 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC18.94■□□□□ 0.62
CtcfQ61164 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CtcfQ61164 Adsl-204ENSMUST00000164806 1595 ntTSL 5 BASIC18.94■□□□□ 0.62
CtcfQ61164 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
CtcfQ61164 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC18.94■□□□□ 0.62
CtcfQ61164 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC18.94■□□□□ 0.62
CtcfQ61164 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
CtcfQ61164 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CtcfQ61164 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CtcfQ61164 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CtcfQ61164 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
CtcfQ61164 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CtcfQ61164 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CtcfQ61164 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CtcfQ61164 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
CtcfQ61164 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CtcfQ61164 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.93■□□□□ 0.62
CtcfQ61164 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CtcfQ61164 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC18.93■□□□□ 0.62
CtcfQ61164 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
CtcfQ61164 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
CtcfQ61164 Map6-207ENSMUST00000208924 2906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
CtcfQ61164 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC18.92■□□□□ 0.62
CtcfQ61164 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CtcfQ61164 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.92■□□□□ 0.62
CtcfQ61164 Ube2i-213ENSMUST00000174031 824 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC18.92■□□□□ 0.62
CtcfQ61164 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.92■□□□□ 0.62
CtcfQ61164 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
CtcfQ61164 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
CtcfQ61164 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
CtcfQ61164 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CtcfQ61164 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.91■□□□□ 0.62
CtcfQ61164 Fam57b-207ENSMUST00000207020 1777 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 Ubp1-202ENSMUST00000084885 3850 ntAPPRIS P4 TSL 5 BASIC18.91■□□□□ 0.62
CtcfQ61164 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 Wnt2b-201ENSMUST00000029429 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.91■□□□□ 0.62
CtcfQ61164 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
CtcfQ61164 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CtcfQ61164 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 Gm12896-201ENSMUST00000118430 226 ntBASIC18.91■□□□□ 0.62
CtcfQ61164 Mir8112-201ENSMUST00000184382 131 ntBASIC18.91■□□□□ 0.62
CtcfQ61164 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CtcfQ61164 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC18.91■□□□□ 0.62
CtcfQ61164 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CtcfQ61164 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms