Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Ldb1-205ENSMUST00000137771 2014 ntTSL 5 BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Ptchd3Q0EEE2 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Adgrb2-204ENSMUST00000106015 4982 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Usp47-201ENSMUST00000106653 5540 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Ptchd3Q0EEE2 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Fmnl2-202ENSMUST00000050719 3380 ntTSL 5 BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Gm12933-201ENSMUST00000120203 872 ntBASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Ptchd3Q0EEE2 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Gm10602-201ENSMUST00000098239 609 ntBASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Ptchd3Q0EEE2 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Gm16401-202ENSMUST00000197463 2074 ntBASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Ptchd3Q0EEE2 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
Ptchd3Q0EEE2 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Ptchd3Q0EEE2 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Ptchd3Q0EEE2 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 42.9 ms