Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Col6a1Q04857 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Col6a1Q04857 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Col6a1Q04857 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC18.98■□□□□ 0.63
Col6a1Q04857 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col6a1Q04857 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col6a1Q04857 Pomgnt2-201ENSMUST00000084743 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col6a1Q04857 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col6a1Q04857 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Col6a1Q04857 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC18.97■□□□□ 0.63
Col6a1Q04857 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.97■□□□□ 0.63
Col6a1Q04857 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC18.97■□□□□ 0.63
Col6a1Q04857 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col6a1Q04857 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col6a1Q04857 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col6a1Q04857 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.97■□□□□ 0.63
Col6a1Q04857 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col6a1Q04857 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Col6a1Q04857 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Col6a1Q04857 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col6a1Q04857 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col6a1Q04857 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col6a1Q04857 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Col6a1Q04857 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.96■□□□□ 0.63
Col6a1Q04857 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
Col6a1Q04857 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.96■□□□□ 0.63
Col6a1Q04857 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC18.96■□□□□ 0.63
Col6a1Q04857 Il3ra-202ENSMUST00000223589 738 ntBASIC18.96■□□□□ 0.63
Col6a1Q04857 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col6a1Q04857 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Col6a1Q04857 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Col6a1Q04857 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col6a1Q04857 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col6a1Q04857 Gm38345-201ENSMUST00000192635 1748 ntBASIC18.95■□□□□ 0.62
Col6a1Q04857 Gm11860-201ENSMUST00000122346 1010 ntBASIC18.95■□□□□ 0.62
Col6a1Q04857 Gm26039-201ENSMUST00000158152 144 ntBASIC18.95■□□□□ 0.62
Col6a1Q04857 Tma7-201ENSMUST00000167504 944 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col6a1Q04857 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col6a1Q04857 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
Col6a1Q04857 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col6a1Q04857 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col6a1Q04857 Lce3c-201ENSMUST00000055375 567 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col6a1Q04857 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Col6a1Q04857 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Col6a1Q04857 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC18.95■□□□□ 0.62
Col6a1Q04857 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Col6a1Q04857 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Col6a1Q04857 Kxd1-202ENSMUST00000117580 696 ntTSL 5 BASIC18.94■□□□□ 0.62
Col6a1Q04857 Gm6623-201ENSMUST00000173570 544 ntBASIC18.94■□□□□ 0.62
Col6a1Q04857 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Col6a1Q04857 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC18.94■□□□□ 0.62
Col6a1Q04857 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.94■□□□□ 0.62
Col6a1Q04857 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Col6a1Q04857 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC18.94■□□□□ 0.62
Col6a1Q04857 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col6a1Q04857 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col6a1Q04857 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col6a1Q04857 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col6a1Q04857 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col6a1Q04857 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Col6a1Q04857 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Col6a1Q04857 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Col6a1Q04857 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Col6a1Q04857 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC18.93■□□□□ 0.62
Col6a1Q04857 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC18.93■□□□□ 0.62
Col6a1Q04857 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Col6a1Q04857 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Col6a1Q04857 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col6a1Q04857 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
Col6a1Q04857 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Col6a1Q04857 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC18.92■□□□□ 0.62
Col6a1Q04857 Gm5864-201ENSMUST00000202263 970 ntBASIC18.92■□□□□ 0.62
Col6a1Q04857 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col6a1Q04857 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Col6a1Q04857 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
Col6a1Q04857 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Col6a1Q04857 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Col6a1Q04857 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Col6a1Q04857 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Col6a1Q04857 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col6a1Q04857 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col6a1Q04857 Dhodh-209ENSMUST00000143900 1455 ntTSL 5 BASIC18.91■□□□□ 0.62
Col6a1Q04857 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col6a1Q04857 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Col6a1Q04857 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 28.4 ms