Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Slc35f1-201ENSMUST00000105473 4941 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Nkx2-1P50220 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Nkx2-1P50220 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Gm42918-201ENSMUST00000199249 1580 ntBASIC14.29□□□□□ -0.12
Nkx2-1P50220 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Nkx2-1P50220 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Poglut1-201ENSMUST00000036210 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Runx2-203ENSMUST00000113572 6463 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Gm20628-201ENSMUST00000177363 3215 ntBASIC14.28□□□□□ -0.12
Nkx2-1P50220 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Nkx2-1P50220 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Nkx2-1P50220 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Nkx2-1P50220 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 62.7 ms