Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC14.18□□□□□ -0.14
Sdc1P18828 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC14.18□□□□□ -0.14
Sdc1P18828 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC14.18□□□□□ -0.14
Sdc1P18828 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC14.18□□□□□ -0.14
Sdc1P18828 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Sdc1P18828 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Sdc1P18828 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Zfand6-208ENSMUST00000209117 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
Sdc1P18828 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC14.17□□□□□ -0.14
Sdc1P18828 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC14.17□□□□□ -0.14
Sdc1P18828 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC14.17□□□□□ -0.14
Sdc1P18828 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Gm11620-201ENSMUST00000118770 1845 ntBASIC14.17□□□□□ -0.14
Sdc1P18828 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Sdc1P18828 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Gtf3c4-204ENSMUST00000171404 7127 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC14.17□□□□□ -0.14
Sdc1P18828 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Sdc1P18828 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC14.16□□□□□ -0.14
Sdc1P18828 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC14.16□□□□□ -0.14
Sdc1P18828 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sdc1P18828 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Sdc1P18828 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC14.16□□□□□ -0.14
Sdc1P18828 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Acox1-201ENSMUST00000066587 3987 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Sdc1P18828 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC14.15□□□□□ -0.14
Sdc1P18828 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC14.15□□□□□ -0.14
Sdc1P18828 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC14.15□□□□□ -0.14
Sdc1P18828 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Sdc1P18828 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Sdc1P18828 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC14.15□□□□□ -0.14
Sdc1P18828 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Sdc1P18828 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 78.6 ms