Protein–RNA interactions for Protein: Q99MQ5

Col25a1, Collagen alpha-1(XXV) chain, mousemouse

Predictions only

Length 666 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col25a1Q99MQ5 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
Col25a1Q99MQ5 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
Col25a1Q99MQ5 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Col25a1Q99MQ5 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
Col25a1Q99MQ5 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
Col25a1Q99MQ5 Gm6345-201ENSMUST00000180378 1691 ntBASIC25.23■■□□□ 1.63
Col25a1Q99MQ5 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC25.23■■□□□ 1.63
Col25a1Q99MQ5 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Col25a1Q99MQ5 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
Col25a1Q99MQ5 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
Col25a1Q99MQ5 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC25.22■■□□□ 1.63
Col25a1Q99MQ5 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC25.22■■□□□ 1.63
Col25a1Q99MQ5 Gm16437-201ENSMUST00000025669 507 ntBASIC25.22■■□□□ 1.63
Col25a1Q99MQ5 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Col25a1Q99MQ5 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC25.21■■□□□ 1.63
Col25a1Q99MQ5 Gm27502-201ENSMUST00000183495 199 ntBASIC25.21■■□□□ 1.63
Col25a1Q99MQ5 Gm6658-202ENSMUST00000209493 1885 ntBASIC25.2■■□□□ 1.62
Col25a1Q99MQ5 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Col25a1Q99MQ5 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Col25a1Q99MQ5 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC25.2■■□□□ 1.62
Col25a1Q99MQ5 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC25.19■■□□□ 1.62
Col25a1Q99MQ5 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC25.18■■□□□ 1.62
Col25a1Q99MQ5 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Col25a1Q99MQ5 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Col25a1Q99MQ5 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Col25a1Q99MQ5 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Col25a1Q99MQ5 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Col25a1Q99MQ5 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC25.15■■□□□ 1.62
Col25a1Q99MQ5 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC25.15■■□□□ 1.62
Col25a1Q99MQ5 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC25.14■■□□□ 1.62
Col25a1Q99MQ5 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC25.14■■□□□ 1.62
Col25a1Q99MQ5 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC25.13■■□□□ 1.61
Col25a1Q99MQ5 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Col25a1Q99MQ5 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Col25a1Q99MQ5 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC25.1■■□□□ 1.61
Col25a1Q99MQ5 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
Col25a1Q99MQ5 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
Col25a1Q99MQ5 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Col25a1Q99MQ5 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Col25a1Q99MQ5 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC25.08■■□□□ 1.61
Col25a1Q99MQ5 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Col25a1Q99MQ5 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
Col25a1Q99MQ5 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC25.07■■□□□ 1.6
Col25a1Q99MQ5 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
Col25a1Q99MQ5 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC25.07■■□□□ 1.6
Col25a1Q99MQ5 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC25.07■■□□□ 1.6
Col25a1Q99MQ5 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Col25a1Q99MQ5 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Col25a1Q99MQ5 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC25.06■■□□□ 1.6
Col25a1Q99MQ5 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC25.05■■□□□ 1.6
Col25a1Q99MQ5 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Col25a1Q99MQ5 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC25.05■■□□□ 1.6
Col25a1Q99MQ5 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC25.04■■□□□ 1.6
Col25a1Q99MQ5 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
Col25a1Q99MQ5 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC25.02■■□□□ 1.6
Col25a1Q99MQ5 Gm5067-201ENSMUST00000170449 1009 ntBASIC25.02■■□□□ 1.6
Col25a1Q99MQ5 AC153504.1-201ENSMUST00000218379 2290 ntBASIC25.02■■□□□ 1.6
Col25a1Q99MQ5 AC093043.1-201ENSMUST00000226700 898 ntBASIC25.01■■□□□ 1.59
Col25a1Q99MQ5 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Col25a1Q99MQ5 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Col25a1Q99MQ5 Gm5921-201ENSMUST00000075898 882 ntBASIC25.01■■□□□ 1.59
Col25a1Q99MQ5 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC25■■□□□ 1.59
Col25a1Q99MQ5 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Col25a1Q99MQ5 Gm5522-201ENSMUST00000189483 1242 ntBASIC25■■□□□ 1.59
Col25a1Q99MQ5 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC25■■□□□ 1.59
Col25a1Q99MQ5 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
Col25a1Q99MQ5 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC24.99■■□□□ 1.59
Col25a1Q99MQ5 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC24.98■■□□□ 1.59
Col25a1Q99MQ5 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Col25a1Q99MQ5 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC24.98■■□□□ 1.59
Col25a1Q99MQ5 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Col25a1Q99MQ5 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Col25a1Q99MQ5 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Col25a1Q99MQ5 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC24.97■■□□□ 1.59
Col25a1Q99MQ5 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
Col25a1Q99MQ5 Rps24-207ENSMUST00000224568 714 ntBASIC24.96■■□□□ 1.59
Col25a1Q99MQ5 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
Col25a1Q99MQ5 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
Col25a1Q99MQ5 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC24.94■■□□□ 1.58
Col25a1Q99MQ5 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Col25a1Q99MQ5 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Col25a1Q99MQ5 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC24.92■■□□□ 1.58
Col25a1Q99MQ5 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Col25a1Q99MQ5 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.92■■□□□ 1.58
Col25a1Q99MQ5 Gm14523-201ENSMUST00000117260 558 ntBASIC24.91■■□□□ 1.58
Col25a1Q99MQ5 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Col25a1Q99MQ5 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
Col25a1Q99MQ5 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Col25a1Q99MQ5 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC24.89■■□□□ 1.58
Col25a1Q99MQ5 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
Col25a1Q99MQ5 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
Col25a1Q99MQ5 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC24.87■■□□□ 1.57
Col25a1Q99MQ5 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Col25a1Q99MQ5 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Col25a1Q99MQ5 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
Col25a1Q99MQ5 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
Col25a1Q99MQ5 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
Col25a1Q99MQ5 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Col25a1Q99MQ5 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Col25a1Q99MQ5 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Retrieved 100 of 76,532 protein–RNA pairs in 16.3 ms