Protein–RNA interactions for Protein: Q8BGY9

Slc5a7, High affinity choline transporter 1, mousemouse

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc5a7Q8BGY9 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Slc5a7Q8BGY9 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Slc5a7Q8BGY9 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Slc5a7Q8BGY9 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Slc5a7Q8BGY9 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Slc5a7Q8BGY9 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Slc5a7Q8BGY9 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Slc5a7Q8BGY9 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Slc5a7Q8BGY9 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC20.88■□□□□ 0.93
Slc5a7Q8BGY9 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Slc5a7Q8BGY9 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Slc5a7Q8BGY9 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Slc5a7Q8BGY9 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Slc5a7Q8BGY9 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Slc5a7Q8BGY9 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Slc5a7Q8BGY9 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Slc5a7Q8BGY9 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Slc5a7Q8BGY9 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Slc5a7Q8BGY9 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Slc5a7Q8BGY9 Peli2-204ENSMUST00000226513 1320 ntBASIC20.85■□□□□ 0.93
Slc5a7Q8BGY9 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
Slc5a7Q8BGY9 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Slc5a7Q8BGY9 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Slc5a7Q8BGY9 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Slc5a7Q8BGY9 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Slc5a7Q8BGY9 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Slc5a7Q8BGY9 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Slc5a7Q8BGY9 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Slc5a7Q8BGY9 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Slc5a7Q8BGY9 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
Slc5a7Q8BGY9 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Slc5a7Q8BGY9 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Slc5a7Q8BGY9 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Slc5a7Q8BGY9 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Slc5a7Q8BGY9 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Slc5a7Q8BGY9 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Slc5a7Q8BGY9 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Slc5a7Q8BGY9 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Slc5a7Q8BGY9 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Slc5a7Q8BGY9 Fam181b-201ENSMUST00000051179 2003 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Slc5a7Q8BGY9 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Slc5a7Q8BGY9 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Slc5a7Q8BGY9 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
Slc5a7Q8BGY9 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Slc5a7Q8BGY9 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC20.77■□□□□ 0.92
Slc5a7Q8BGY9 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Slc5a7Q8BGY9 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Slc5a7Q8BGY9 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Slc5a7Q8BGY9 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.76■□□□□ 0.91
Slc5a7Q8BGY9 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
Slc5a7Q8BGY9 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Slc5a7Q8BGY9 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Slc5a7Q8BGY9 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Slc5a7Q8BGY9 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Slc5a7Q8BGY9 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Slc5a7Q8BGY9 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Slc5a7Q8BGY9 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Slc5a7Q8BGY9 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.72■□□□□ 0.91
Slc5a7Q8BGY9 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Slc5a7Q8BGY9 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Slc5a7Q8BGY9 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Slc5a7Q8BGY9 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Slc5a7Q8BGY9 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Slc5a7Q8BGY9 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
Slc5a7Q8BGY9 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
Slc5a7Q8BGY9 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Slc5a7Q8BGY9 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Slc5a7Q8BGY9 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Slc5a7Q8BGY9 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Slc5a7Q8BGY9 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Slc5a7Q8BGY9 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
Slc5a7Q8BGY9 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Slc5a7Q8BGY9 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Slc5a7Q8BGY9 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Slc5a7Q8BGY9 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Slc5a7Q8BGY9 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Slc5a7Q8BGY9 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Slc5a7Q8BGY9 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Slc5a7Q8BGY9 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Slc5a7Q8BGY9 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Slc5a7Q8BGY9 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Slc5a7Q8BGY9 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Slc5a7Q8BGY9 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Slc5a7Q8BGY9 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Slc5a7Q8BGY9 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Slc5a7Q8BGY9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
Slc5a7Q8BGY9 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Slc5a7Q8BGY9 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Slc5a7Q8BGY9 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Slc5a7Q8BGY9 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
Slc5a7Q8BGY9 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Slc5a7Q8BGY9 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Slc5a7Q8BGY9 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Slc5a7Q8BGY9 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Slc5a7Q8BGY9 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Slc5a7Q8BGY9 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Slc5a7Q8BGY9 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Slc5a7Q8BGY9 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC20.61■□□□□ 0.89
Slc5a7Q8BGY9 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Slc5a7Q8BGY9 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms