Protein–RNA interactions for Protein: Q78T54

Vma21, Vacuolar ATPase assembly integral membrane protein Vma21, mousemouse

Predictions only

Length 101 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vma21Q78T54 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Vma21Q78T54 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC19.35■□□□□ 0.69
Vma21Q78T54 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Vma21Q78T54 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vma21Q78T54 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vma21Q78T54 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Vma21Q78T54 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Vma21Q78T54 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Vma21Q78T54 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Vma21Q78T54 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vma21Q78T54 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Vma21Q78T54 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Vma21Q78T54 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Vma21Q78T54 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vma21Q78T54 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vma21Q78T54 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Vma21Q78T54 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Vma21Q78T54 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Vma21Q78T54 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Vma21Q78T54 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vma21Q78T54 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Vma21Q78T54 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Vma21Q78T54 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Vma21Q78T54 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.29■□□□□ 0.68
Vma21Q78T54 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vma21Q78T54 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Vma21Q78T54 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vma21Q78T54 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vma21Q78T54 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Vma21Q78T54 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Vma21Q78T54 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Vma21Q78T54 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Vma21Q78T54 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vma21Q78T54 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vma21Q78T54 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Vma21Q78T54 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
Vma21Q78T54 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vma21Q78T54 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC19.25■□□□□ 0.67
Vma21Q78T54 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Vma21Q78T54 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Vma21Q78T54 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vma21Q78T54 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Vma21Q78T54 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC19.24■□□□□ 0.67
Vma21Q78T54 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Vma21Q78T54 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Vma21Q78T54 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vma21Q78T54 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Vma21Q78T54 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vma21Q78T54 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vma21Q78T54 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC19.22■□□□□ 0.67
Vma21Q78T54 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
Vma21Q78T54 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Vma21Q78T54 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
Vma21Q78T54 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vma21Q78T54 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vma21Q78T54 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vma21Q78T54 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Vma21Q78T54 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Vma21Q78T54 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Vma21Q78T54 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Vma21Q78T54 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.2■□□□□ 0.66
Vma21Q78T54 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Vma21Q78T54 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Vma21Q78T54 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Vma21Q78T54 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vma21Q78T54 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vma21Q78T54 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Vma21Q78T54 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Vma21Q78T54 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Vma21Q78T54 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Vma21Q78T54 Gm43863-201ENSMUST00000203822 1192 ntBASIC19.18■□□□□ 0.66
Vma21Q78T54 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Vma21Q78T54 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
Vma21Q78T54 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Vma21Q78T54 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC19.17■□□□□ 0.66
Vma21Q78T54 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vma21Q78T54 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vma21Q78T54 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vma21Q78T54 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Vma21Q78T54 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Vma21Q78T54 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Vma21Q78T54 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
Vma21Q78T54 AC157572.2-201ENSMUST00000226970 908 ntBASIC19.15■□□□□ 0.66
Vma21Q78T54 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Vma21Q78T54 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Vma21Q78T54 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Vma21Q78T54 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC19.14■□□□□ 0.65
Vma21Q78T54 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC19.14■□□□□ 0.65
Vma21Q78T54 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Vma21Q78T54 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Vma21Q78T54 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC19.13■□□□□ 0.65
Vma21Q78T54 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vma21Q78T54 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vma21Q78T54 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
Vma21Q78T54 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
Vma21Q78T54 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vma21Q78T54 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vma21Q78T54 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Vma21Q78T54 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Vma21Q78T54 Zfp131-205ENSMUST00000223812 663 ntBASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms