Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Col11a1Q61245 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Col11a1Q61245 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Col11a1Q61245 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
Col11a1Q61245 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Col11a1Q61245 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Col11a1Q61245 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Col11a1Q61245 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
Col11a1Q61245 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
Col11a1Q61245 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC28.09■■■□□ 2.09
Col11a1Q61245 Gm30023-201ENSMUST00000197970 889 ntBASIC28.09■■■□□ 2.09
Col11a1Q61245 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC28.08■■■□□ 2.09
Col11a1Q61245 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Col11a1Q61245 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC28.08■■■□□ 2.09
Col11a1Q61245 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC28.08■■■□□ 2.08
Col11a1Q61245 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Col11a1Q61245 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Col11a1Q61245 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC28.05■■■□□ 2.08
Col11a1Q61245 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC28.05■■■□□ 2.08
Col11a1Q61245 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC28.04■■■□□ 2.08
Col11a1Q61245 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Col11a1Q61245 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
Col11a1Q61245 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC28.04■■■□□ 2.08
Col11a1Q61245 Gm12366-201ENSMUST00000121722 873 ntBASIC28.04■■■□□ 2.08
Col11a1Q61245 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC28.04■■■□□ 2.08
Col11a1Q61245 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC28.04■■■□□ 2.08
Col11a1Q61245 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Col11a1Q61245 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC28.04■■■□□ 2.08
Col11a1Q61245 Gm5786-201ENSMUST00000085368 882 ntBASIC28.04■■■□□ 2.08
Col11a1Q61245 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC28.03■■■□□ 2.08
Col11a1Q61245 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC28.03■■■□□ 2.08
Col11a1Q61245 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC28.02■■■□□ 2.08
Col11a1Q61245 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Col11a1Q61245 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC28■■■□□ 2.07
Col11a1Q61245 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC28■■■□□ 2.07
Col11a1Q61245 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC27.97■■■□□ 2.07
Col11a1Q61245 Scarna2-201ENSMUST00000157560 414 ntBASIC27.97■■■□□ 2.07
Col11a1Q61245 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Col11a1Q61245 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Col11a1Q61245 Gm11687-201ENSMUST00000118911 886 ntBASIC27.97■■■□□ 2.07
Col11a1Q61245 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC27.97■■■□□ 2.07
Col11a1Q61245 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
Col11a1Q61245 Gm4799-201ENSMUST00000095396 657 ntBASIC27.95■■■□□ 2.07
Col11a1Q61245 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC27.94■■■□□ 2.06
Col11a1Q61245 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC27.93■■■□□ 2.06
Col11a1Q61245 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
Col11a1Q61245 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
Col11a1Q61245 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
Col11a1Q61245 Gm9806-201ENSMUST00000051080 552 ntBASIC27.92■■■□□ 2.06
Col11a1Q61245 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC27.91■■■□□ 2.06
Col11a1Q61245 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
Col11a1Q61245 Pkd1-207ENSMUST00000228550 1050 ntBASIC27.9■■■□□ 2.06
Col11a1Q61245 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC27.89■■■□□ 2.06
Col11a1Q61245 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC27.89■■■□□ 2.06
Col11a1Q61245 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC27.88■■■□□ 2.05
Col11a1Q61245 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
Col11a1Q61245 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC27.87■■■□□ 2.05
Col11a1Q61245 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC27.87■■■□□ 2.05
Col11a1Q61245 Gm45364-201ENSMUST00000210883 159 ntBASIC27.85■■■□□ 2.05
Col11a1Q61245 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Col11a1Q61245 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC27.85■■■□□ 2.05
Col11a1Q61245 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC27.85■■■□□ 2.05
Col11a1Q61245 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC27.84■■■□□ 2.05
Col11a1Q61245 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.84■■■□□ 2.05
Col11a1Q61245 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC27.83■■■□□ 2.05
Col11a1Q61245 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC27.83■■■□□ 2.05
Col11a1Q61245 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC27.83■■■□□ 2.05
Col11a1Q61245 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC27.83■■■□□ 2.05
Col11a1Q61245 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC27.83■■■□□ 2.05
Col11a1Q61245 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC27.82■■■□□ 2.04
Col11a1Q61245 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC27.82■■■□□ 2.04
Col11a1Q61245 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC27.82■■■□□ 2.04
Col11a1Q61245 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC27.82■■■□□ 2.04
Col11a1Q61245 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
Col11a1Q61245 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC27.81■■■□□ 2.04
Col11a1Q61245 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC27.81■■■□□ 2.04
Col11a1Q61245 Gm27502-201ENSMUST00000183495 199 ntBASIC27.81■■■□□ 2.04
Col11a1Q61245 Gm16437-201ENSMUST00000025669 507 ntBASIC27.81■■■□□ 2.04
Col11a1Q61245 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
Col11a1Q61245 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
Col11a1Q61245 Gm7332-201ENSMUST00000118351 454 ntBASIC27.78■■■□□ 2.04
Col11a1Q61245 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Col11a1Q61245 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC27.78■■■□□ 2.04
Col11a1Q61245 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
Col11a1Q61245 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC27.77■■■□□ 2.04
Col11a1Q61245 Pcf11-205ENSMUST00000208255 1720 ntBASIC27.77■■■□□ 2.04
Col11a1Q61245 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC27.77■■■□□ 2.04
Col11a1Q61245 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC27.77■■■□□ 2.04
Col11a1Q61245 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC27.75■■■□□ 2.03
Col11a1Q61245 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC27.74■■■□□ 2.03
Col11a1Q61245 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
Col11a1Q61245 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Col11a1Q61245 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC27.72■■■□□ 2.03
Col11a1Q61245 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC27.72■■■□□ 2.03
Col11a1Q61245 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Col11a1Q61245 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
Col11a1Q61245 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC27.71■■■□□ 2.03
Col11a1Q61245 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC27.71■■■□□ 2.03
Col11a1Q61245 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
Col11a1Q61245 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms