Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Kif20b-203ENSMUST00000223907 5423 ntAPPRIS ALT2 BASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Traj7-201ENSMUST00000103733 59 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm24120-201ENSMUST00000103978 129 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Igkv13-85-201ENSMUST00000114212 347 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm13329-201ENSMUST00000117063 265 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm11698-201ENSMUST00000117948 455 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm14560-201ENSMUST00000118672 375 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm15357-201ENSMUST00000119160 285 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm11909-201ENSMUST00000121424 759 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm5353-201ENSMUST00000139800 793 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm11419-201ENSMUST00000150772 683 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm25058-201ENSMUST00000157365 128 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm25861-201ENSMUST00000158251 109 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm16545-201ENSMUST00000161968 463 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Skint1-205ENSMUST00000162885 603 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Mir6416-201ENSMUST00000183664 117 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm9320-201ENSMUST00000184151 473 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm37624-201ENSMUST00000193751 219 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 AC164561.1-201ENSMUST00000220414 115 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm24045-201ENSMUST00000083113 98 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 AC154573.1-201ENSMUST00000225913 4659 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gabra6-202ENSMUST00000109286 1554 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm43443-201ENSMUST00000202337 2393 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 A830019L24Rik-202ENSMUST00000198056 3165 ntTSL 3 BASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Tsga10-203ENSMUST00000114902 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Gm37833-201ENSMUST00000194342 3256 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 AC192616.2-201ENSMUST00000221482 3841 ntBASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Piga-201ENSMUST00000033754 3594 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Lrrn3-201ENSMUST00000043884 3865 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Trim47Q8C0E3 Nipal1-201ENSMUST00000087212 4206 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Trim47Q8C0E3 St18-210ENSMUST00000150761 4264 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Ccna2-205ENSMUST00000196316 2001 ntTSL 5 BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Vmn1r67-202ENSMUST00000226237 2352 ntAPPRIS ALT2 BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Pkhd1-201ENSMUST00000088448 12935 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Acsl4-204ENSMUST00000112907 5137 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Tmem45a-201ENSMUST00000023435 2701 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Gm19666-201ENSMUST00000198176 1893 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Trbv12-1-201ENSMUST00000103267 389 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Trav2-201ENSMUST00000103568 325 ntAPPRIS ALT2 BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Gm12285-201ENSMUST00000117347 233 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Gm3267-201ENSMUST00000118671 473 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Gm12852-201ENSMUST00000119478 719 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Gm14591-201ENSMUST00000120407 518 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Gm15120-201ENSMUST00000120602 301 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Gm25783-201ENSMUST00000122525 190 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Gm25714-201ENSMUST00000158626 296 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Gm25834-201ENSMUST00000158916 101 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Vmn1r-ps40-201ENSMUST00000172862 343 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Scgb3a2-203ENSMUST00000189750 578 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Sprr2h-202ENSMUST00000191886 297 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Ighv3-4-201ENSMUST00000193408 353 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Gm9442-201ENSMUST00000194242 319 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 AC158798.1-201ENSMUST00000219714 711 ntTSL 5 BASIC5.65□□□□□ -1.5
Trim47Q8C0E3 AC157515.1-201ENSMUST00000220953 450 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 AC154576.1-201ENSMUST00000225864 563 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Gm26330-201ENSMUST00000082817 104 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Mir342-201ENSMUST00000083502 99 ntBASIC5.65□□□□□ -1.5
Trim47Q8C0E3 Nlrp9b-201ENSMUST00000073151 3346 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
Trim47Q8C0E3 Olfr1443-201ENSMUST00000049724 4343 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
Trim47Q8C0E3 Olfr586-203ENSMUST00000213281 5001 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
Trim47Q8C0E3 Fpgt-201ENSMUST00000066568 3518 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
Trim47Q8C0E3 Pls3-202ENSMUST00000114057 3160 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
Trim47Q8C0E3 Olfr1180-203ENSMUST00000217320 2107 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
Trim47Q8C0E3 Gm5798-201ENSMUST00000164613 1751 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
Trim47Q8C0E3 Gm8104-201ENSMUST00000168165 1761 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
Trim47Q8C0E3 Gm8011-201ENSMUST00000172163 1751 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
Trim47Q8C0E3 CT009733.2-202ENSMUST00000224171 4748 ntBASIC5.65□□□□□ -1.51
Trim47Q8C0E3 Gm44751-201ENSMUST00000208302 4387 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm37767-201ENSMUST00000193239 1834 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 9230109A22Rik-202ENSMUST00000228644 1853 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Scn9a-206ENSMUST00000164384 7530 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Slc22a30-202ENSMUST00000096269 2255 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Olfr1104-202ENSMUST00000214857 2693 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm38067-201ENSMUST00000192346 1911 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Vmn1r89-204ENSMUST00000227239 1992 ntAPPRIS P2 BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Akr1c14-202ENSMUST00000118717 3183 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Lingo2-210ENSMUST00000164772 3562 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 March1-203ENSMUST00000098708 4000 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Serpinb3b-202ENSMUST00000166100 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm14552-201ENSMUST00000126906 2098 ntTSL 5 BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Impg1-201ENSMUST00000085289 3356 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Igkv8-19-201ENSMUST00000103389 305 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm25419-201ENSMUST00000104215 191 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm25875-201ENSMUST00000104323 107 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Tmco2-201ENSMUST00000106268 719 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm14142-201ENSMUST00000117833 296 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm15493-201ENSMUST00000119461 528 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 2210408F21Rik-203ENSMUST00000133510 429 ntTSL 3 BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm12114-201ENSMUST00000147896 656 ntTSL 3 BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm24477-201ENSMUST00000157438 103 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm17152-201ENSMUST00000172430 535 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Vmn2r-ps6-201ENSMUST00000176317 1101 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm27465-201ENSMUST00000184290 91 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Hmgb1-rs16-201ENSMUST00000185927 613 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm5372-201ENSMUST00000187540 409 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm28468-201ENSMUST00000188536 615 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm37997-201ENSMUST00000193515 267 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm42855-201ENSMUST00000197388 253 ntBASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Gm42500-201ENSMUST00000199898 517 ntTSL 3 BASIC5.64□□□□□ -1.51
Trim47Q8C0E3 Mgst1-208ENSMUST00000204628 471 ntTSL 3 BASIC5.64□□□□□ -1.51
Retrieved 100 of 76,532 protein–RNA pairs in 82.7 ms