Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Tpm1P58771 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Tpm1P58771 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Tpm1P58771 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Tpm1P58771 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Tpm1P58771 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Tpm1P58771 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Tpm1P58771 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Tpm1P58771 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Tpm1P58771 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Tpm1P58771 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Tpm1P58771 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Tpm1P58771 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Tpm1P58771 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Dancr-204ENSMUST00000132389 2347 ntBASIC19.27■□□□□ 0.68
Tpm1P58771 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC19.27■□□□□ 0.68
Tpm1P58771 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC19.27■□□□□ 0.68
Tpm1P58771 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.27■□□□□ 0.68
Tpm1P58771 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Tpm1P58771 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Tpm1P58771 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC19.27■□□□□ 0.68
Tpm1P58771 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.27■□□□□ 0.68
Tpm1P58771 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Tpm1P58771 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Tpm1P58771 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Tpm1P58771 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Tpm1P58771 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Tpm1P58771 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Tpm1P58771 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Tpm1P58771 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC19.26■□□□□ 0.67
Tpm1P58771 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Tpm1P58771 Sash1-201ENSMUST00000015449 7183 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Tpm1P58771 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Tpm1P58771 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Tpm1P58771 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Tpm1P58771 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Tpm1P58771 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Tpm1P58771 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
Tpm1P58771 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Tpm1P58771 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.26■□□□□ 0.67
Tpm1P58771 Zkscan3-208ENSMUST00000224820 5398 ntBASIC19.26■□□□□ 0.67
Tpm1P58771 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Tpm1P58771 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Tpm1P58771 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Tpm1P58771 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Tpm1P58771 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tpm1P58771 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tpm1P58771 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tpm1P58771 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tpm1P58771 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Tpm1P58771 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.25■□□□□ 0.67
Tpm1P58771 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tpm1P58771 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.25■□□□□ 0.67
Tpm1P58771 Gm7514-201ENSMUST00000209475 934 ntBASIC19.25■□□□□ 0.67
Tpm1P58771 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tpm1P58771 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tpm1P58771 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tpm1P58771 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tpm1P58771 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Tpm1P58771 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Tpm1P58771 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Tpm1P58771 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.24■□□□□ 0.67
Tpm1P58771 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.24■□□□□ 0.67
Tpm1P58771 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.24■□□□□ 0.67
Tpm1P58771 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
Tpm1P58771 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC19.24■□□□□ 0.67
Tpm1P58771 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
Tpm1P58771 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC19.24■□□□□ 0.67
Tpm1P58771 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC19.24■□□□□ 0.67
Tpm1P58771 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Tpm1P58771 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Tpm1P58771 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms