Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Gm11841-201ENSMUST00000117060 1963 ntBASIC18.68■□□□□ 0.58
RaraP11416 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Zbtb45-201ENSMUST00000051390 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Car9-201ENSMUST00000030183 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.68■□□□□ 0.58
RaraP11416 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC18.68■□□□□ 0.58
RaraP11416 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Pigl-201ENSMUST00000014389 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
RaraP11416 Spi1-201ENSMUST00000002180 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Zbtb24-202ENSMUST00000213797 2734 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.67■□□□□ 0.58
RaraP11416 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
RaraP11416 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
RaraP11416 Cxcl14-201ENSMUST00000021970 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC18.67■□□□□ 0.58
RaraP11416 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RaraP11416 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
RaraP11416 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RaraP11416 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RaraP11416 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RaraP11416 Tfap2a-209ENSMUST00000225180 1828 ntBASIC18.66■□□□□ 0.58
RaraP11416 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RaraP11416 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RaraP11416 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
RaraP11416 AC166341.7-201ENSMUST00000221698 126 ntBASIC18.66■□□□□ 0.58
RaraP11416 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RaraP11416 Sars2-201ENSMUST00000094632 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RaraP11416 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RaraP11416 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC18.66■□□□□ 0.58
RaraP11416 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RaraP11416 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RaraP11416 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
RaraP11416 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.65■□□□□ 0.58
RaraP11416 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RaraP11416 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC18.65■□□□□ 0.58
RaraP11416 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RaraP11416 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.65■□□□□ 0.58
RaraP11416 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
RaraP11416 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RaraP11416 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RaraP11416 Snx25-203ENSMUST00000110378 3445 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
RaraP11416 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RaraP11416 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RaraP11416 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
RaraP11416 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Rhot2-201ENSMUST00000043897 3189 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RaraP11416 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RaraP11416 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC18.64■□□□□ 0.57
RaraP11416 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Gm27275-201ENSMUST00000184318 272 ntBASIC18.64■□□□□ 0.57
RaraP11416 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RaraP11416 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
RaraP11416 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC18.64■□□□□ 0.57
RaraP11416 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RaraP11416 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RaraP11416 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RaraP11416 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC18.63■□□□□ 0.57
RaraP11416 Gm11620-201ENSMUST00000118770 1845 ntBASIC18.63■□□□□ 0.57
RaraP11416 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RaraP11416 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RaraP11416 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RaraP11416 Gm13158-201ENSMUST00000122007 736 ntBASIC18.63■□□□□ 0.57
RaraP11416 Gm42545-201ENSMUST00000202755 922 ntBASIC18.63■□□□□ 0.57
RaraP11416 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RaraP11416 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RaraP11416 Sar1a-201ENSMUST00000020285 2613 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RaraP11416 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
RaraP11416 Cct6b-201ENSMUST00000021040 1787 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RaraP11416 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC18.63■□□□□ 0.57
RaraP11416 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RaraP11416 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
RaraP11416 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RaraP11416 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms