Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC013283.1-201ENST00000557282 492 ntBASIC7.64□□□□□ -1.19
APOEP02649 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC7.64□□□□□ -1.19
APOEP02649 STARD13-AS-240ENST00000609608 865 ntTSL 5 BASIC7.64□□□□□ -1.19
APOEP02649 AL139123.1-201ENST00000612008 430 ntBASIC7.64□□□□□ -1.19
APOEP02649 pRNA.9-201ENST00000618609 89 ntBASIC7.64□□□□□ -1.19
APOEP02649 OR8D2-201ENST00000624618 1051 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
APOEP02649 DLST-216ENST00000626051 252 ntTSL 5 BASIC7.64□□□□□ -1.19
APOEP02649 LINC01427-203ENST00000635277 781 ntTSL 5 BASIC7.64□□□□□ -1.19
APOEP02649 AL590396.3-201ENST00000636334 300 ntBASIC7.64□□□□□ -1.19
APOEP02649 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC7.64□□□□□ -1.19
APOEP02649 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC7.64□□□□□ -1.19
APOEP02649 RRM2-213ENST00000641198 3431 ntAPPRIS P1 BASIC7.64□□□□□ -1.19
APOEP02649 MELK-211ENST00000545008 2236 ntTSL 2 BASIC7.64□□□□□ -1.19
APOEP02649 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
APOEP02649 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC7.64□□□□□ -1.19
APOEP02649 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
APOEP02649 AC104958.1-201ENST00000509350 1973 ntTSL 2 BASIC7.64□□□□□ -1.19
APOEP02649 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC7.64□□□□□ -1.19
APOEP02649 CR1-203ENST00000367051 7469 ntTSL 5 BASIC7.64□□□□□ -1.19
APOEP02649 LINC01994-201ENST00000496220 1808 ntTSL 2 BASIC7.64□□□□□ -1.19
APOEP02649 EIF4E2-207ENST00000409514 3525 ntTSL 5 BASIC7.64□□□□□ -1.19
APOEP02649 BBOX1-204ENST00000528583 1724 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
APOEP02649 SUPT7L-202ENST00000404798 4114 ntTSL 2 BASIC7.63□□□□□ -1.19
APOEP02649 AL450426.1-201ENST00000635678 1602 ntTSL 5 BASIC7.63□□□□□ -1.19
APOEP02649 NPL-212ENST00000614468 2376 ntTSL 5 BASIC7.63□□□□□ -1.19
APOEP02649 AL136298.2-201ENST00000556497 1570 ntBASIC7.63□□□□□ -1.19
APOEP02649 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 NPIPB11-201ENST00000524087 3653 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
APOEP02649 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 SAR1A-206ENST00000431664 2810 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 EEF1A1P26-201ENST00000458319 1363 ntBASIC7.63□□□□□ -1.19
APOEP02649 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 AL137847.1-201ENST00000416473 444 ntTSL 2 BASIC7.63□□□□□ -1.19
APOEP02649 AL031005.1-201ENST00000416959 723 ntTSL 3 BASIC7.63□□□□□ -1.19
APOEP02649 FDPSP1-201ENST00000424976 1071 ntBASIC7.63□□□□□ -1.19
APOEP02649 AL731892.1-201ENST00000437364 1192 ntBASIC7.63□□□□□ -1.19
APOEP02649 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 AC109587.1-201ENST00000482368 962 ntTSL 3 BASIC7.63□□□□□ -1.19
APOEP02649 XAGE1B-205ENST00000518075 472 ntAPPRIS P1 TSL 2 BASIC7.63□□□□□ -1.19
APOEP02649 AL161747.2-201ENST00000535893 472 ntTSL 5 BASIC7.63□□□□□ -1.19
APOEP02649 AL132640.2-202ENST00000559732 614 ntBASIC7.63□□□□□ -1.19
APOEP02649 AC022405.1-201ENST00000559841 516 ntTSL 3 BASIC7.63□□□□□ -1.19
APOEP02649 AC007611.1-202ENST00000564212 854 ntTSL 3 BASIC7.63□□□□□ -1.19
APOEP02649 RN7SL697P-201ENST00000582484 299 ntBASIC7.63□□□□□ -1.19
APOEP02649 RN7SL178P-201ENST00000582930 304 ntBASIC7.63□□□□□ -1.19
APOEP02649 AC114488.2-207ENST00000585660 700 ntTSL 5 BASIC7.63□□□□□ -1.19
APOEP02649 AC015911.3-201ENST00000592908 849 ntTSL 5 BASIC7.63□□□□□ -1.19
APOEP02649 AC006116.6-201ENST00000593258 1103 ntBASIC7.63□□□□□ -1.19
APOEP02649 NUTM2B-AS1-209ENST00000596088 366 ntTSL 3 BASIC7.63□□□□□ -1.19
APOEP02649 AC010605.1-201ENST00000597303 797 ntTSL 2 BASIC7.63□□□□□ -1.19
APOEP02649 OR7A1P-201ENST00000601206 970 ntBASIC7.63□□□□□ -1.19
APOEP02649 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC7.63□□□□□ -1.19
APOEP02649 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 RAD51AP2-201ENST00000399080 3724 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC7.63□□□□□ -1.19
APOEP02649 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC7.63□□□□□ -1.19
APOEP02649 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC7.63□□□□□ -1.19
APOEP02649 TP63-207ENST00000418709 2810 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC7.63□□□□□ -1.19
APOEP02649 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
APOEP02649 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC7.62□□□□□ -1.19
APOEP02649 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
APOEP02649 CYP2C18-201ENST00000285979 2418 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
APOEP02649 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
APOEP02649 MBNL3-203ENST00000370849 1444 ntTSL 2 BASIC7.62□□□□□ -1.19
APOEP02649 FBXO3-209ENST00000531080 1448 ntTSL 2 BASIC7.62□□□□□ -1.19
APOEP02649 PWRN1-212ENST00000569908 1435 ntBASIC7.62□□□□□ -1.19
APOEP02649 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
APOEP02649 THAP12P3-201ENST00000456373 2266 ntBASIC7.62□□□□□ -1.19
APOEP02649 PLP1-220ENST00000612423 3132 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
APOEP02649 USP37-201ENST00000258399 8032 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
APOEP02649 SAP18-207ENST00000607003 2234 ntAPPRIS ALT1 TSL 1 (best) BASIC7.62□□□□□ -1.19
APOEP02649 AL034417.4-202ENST00000642135 2236 ntBASIC7.62□□□□□ -1.19
APOEP02649 AL021877.2-201ENST00000624442 10684 ntBASIC7.62□□□□□ -1.19
APOEP02649 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
APOEP02649 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
APOEP02649 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
APOEP02649 RAET1G-201ENST00000367360 1107 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.19
APOEP02649 TOMM7-202ENST00000372879 514 ntTSL 4 BASIC7.62□□□□□ -1.19
APOEP02649 IFNA16-201ENST00000380216 939 ntAPPRIS P1 BASIC7.62□□□□□ -1.19
APOEP02649 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC7.62□□□□□ -1.19
APOEP02649 RPL5P4-201ENST00000434805 886 ntBASIC7.62□□□□□ -1.19
APOEP02649 OR52U1P-201ENST00000439752 923 ntBASIC7.62□□□□□ -1.19
APOEP02649 AL353803.3-201ENST00000444641 335 ntBASIC7.62□□□□□ -1.19
APOEP02649 AL929410.2-201ENST00000451170 189 ntBASIC7.62□□□□□ -1.19
APOEP02649 OR7E163P-201ENST00000505943 894 ntBASIC7.62□□□□□ -1.19
APOEP02649 AC068790.1-201ENST00000536166 355 ntBASIC7.62□□□□□ -1.19
APOEP02649 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC7.62□□□□□ -1.19
APOEP02649 LINC01582-201ENST00000560195 560 ntTSL 4 BASIC7.62□□□□□ -1.19
APOEP02649 RPS7P1-201ENST00000571702 585 ntBASIC7.62□□□□□ -1.19
APOEP02649 EXOSC3P2-201ENST00000594464 497 ntBASIC7.62□□□□□ -1.19
APOEP02649 ZNF431-206ENST00000599296 586 ntTSL 5 BASIC7.62□□□□□ -1.19
APOEP02649 AL136139.1-201ENST00000605568 222 ntBASIC7.62□□□□□ -1.19
APOEP02649 AL139317.4-201ENST00000605879 760 ntBASIC7.62□□□□□ -1.19
APOEP02649 AL512413.1-201ENST00000606489 382 ntBASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms