Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm29082-201ENSMUST00000185207 448 ntTSL 5 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm29060-201ENSMUST00000185339 457 ntTSL 5 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm28664-201ENSMUST00000186118 457 ntTSL 5 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm28959-201ENSMUST00000186713 551 ntTSL 5 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm29209-201ENSMUST00000188176 457 ntTSL 5 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm29090-201ENSMUST00000188526 457 ntTSL 5 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm28957-201ENSMUST00000190174 373 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm28792-201ENSMUST00000191482 419 ntTSL 3 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm38080-201ENSMUST00000194035 268 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm43402-201ENSMUST00000197159 159 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm6543-201ENSMUST00000197353 808 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm19708-201ENSMUST00000199386 543 ntTSL 2 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Alox5ap-203ENSMUST00000200928 356 ntTSL 3 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm44411-201ENSMUST00000204172 349 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm4585-201ENSMUST00000207218 452 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 CT485607.2-201ENSMUST00000214650 91 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 AC087891.1-201ENSMUST00000217867 318 ntTSL 5 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Ly6e-ps1-201ENSMUST00000222501 367 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 AC164297.3-201ENSMUST00000224238 94 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 AC172751.1-201ENSMUST00000226887 440 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm9795-201ENSMUST00000062156 693 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm25755-201ENSMUST00000083396 107 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Mir181b-2-201ENSMUST00000083644 89 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Mir452-201ENSMUST00000093629 85 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Olfr1387-202ENSMUST00000214541 4840 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Vmn1r62-201ENSMUST00000173956 1757 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Olfr785-201ENSMUST00000204402 2014 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Olfr1268-ps1-201ENSMUST00000117787 2501 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Cnot4-202ENSMUST00000114989 3279 ntAPPRIS ALT1 TSL 1 (best) BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Vmn1r1-202ENSMUST00000227586 3766 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Glcci1-206ENSMUST00000162567 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm43745-201ENSMUST00000198085 1883 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm10436-201ENSMUST00000071580 1883 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Impg1-201ENSMUST00000085289 3356 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
Rnf40Q3U319 AC103672.3-201ENSMUST00000227649 3243 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Kynu-201ENSMUST00000028223 2733 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm37363-201ENSMUST00000192336 2233 ntBASIC6.02□□□□□ -1.45
Rnf40Q3U319 Gm42702-201ENSMUST00000199515 4217 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Atp2c1-202ENSMUST00000085133 4665 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm35940-201ENSMUST00000213355 4797 ntTSL 5 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm7792-201ENSMUST00000201555 2473 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Olfr622-202ENSMUST00000213536 2219 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Phf11d-201ENSMUST00000095157 2666 ntAPPRIS P2 TSL 1 (best) BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Fam71d-205ENSMUST00000219551 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
Rnf40Q3U319 March1-205ENSMUST00000110255 4177 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm11561-201ENSMUST00000117429 417 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm12820-201ENSMUST00000119233 342 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Defa-ps11-201ENSMUST00000119719 299 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm22984-201ENSMUST00000122751 122 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm2200-201ENSMUST00000124814 764 ntTSL 3 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Hba-ps4-201ENSMUST00000128900 447 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm2117-201ENSMUST00000130478 764 ntTSL 3 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm2101-202ENSMUST00000131997 764 ntTSL 3 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm2165-203ENSMUST00000137981 764 ntTSL 3 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm3669-204ENSMUST00000140946 764 ntTSL 3 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm2619-202ENSMUST00000166777 651 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm3191-201ENSMUST00000167139 346 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm24157-201ENSMUST00000175265 111 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm28849-201ENSMUST00000188127 174 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm28330-201ENSMUST00000190353 171 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm33248-202ENSMUST00000206954 486 ntTSL 5 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 BC024386-203ENSMUST00000209817 825 ntTSL 5 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 AC120555.1-201ENSMUST00000221020 222 ntTSL 5 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm23927-201ENSMUST00000082466 215 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm23138-201ENSMUST00000083365 103 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Gm24029-201ENSMUST00000083928 143 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Cnot4-203ENSMUST00000114993 3473 ntAPPRIS P4 TSL 1 (best) BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Akr1c14-201ENSMUST00000041768 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Ktn1-209ENSMUST00000187262 3913 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Pcdh9-208ENSMUST00000195826 6521 ntAPPRIS P3 TSL 5 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Rc3h2-202ENSMUST00000112934 8948 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Olfr586-203ENSMUST00000213281 5001 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 AC115047.2-201ENSMUST00000214421 1848 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Tubal3-201ENSMUST00000021639 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Ubtfl1-203ENSMUST00000169398 4430 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Dopey1-201ENSMUST00000034987 8933 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Enpp3-201ENSMUST00000020169 4253 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
Rnf40Q3U319 AC126673.3-201ENSMUST00000223414 3829 ntBASIC6.01□□□□□ -1.45
Rnf40Q3U319 Olfr1339-202ENSMUST00000217522 2559 ntAPPRIS P1 TSL 3 BASIC6.01□□□□□ -1.45
Rnf40Q3U319 AW551984-202ENSMUST00000119722 4224 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
Rnf40Q3U319 Kcnj2-201ENSMUST00000042970 5444 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
Rnf40Q3U319 Dleu2-202ENSMUST00000180917 3544 ntTSL 1 (best) BASIC6□□□□□ -1.45
Rnf40Q3U319 Gm37456-201ENSMUST00000193176 5837 ntBASIC6□□□□□ -1.45
Rnf40Q3U319 Olfr1302-203ENSMUST00000215244 2729 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
Rnf40Q3U319 Zkscan8-204ENSMUST00000224362 6954 ntAPPRIS ALT2 BASIC6□□□□□ -1.45
Rnf40Q3U319 Dmtf1-202ENSMUST00000095017 3498 ntTSL 1 (best) BASIC6□□□□□ -1.45
Rnf40Q3U319 Zscan4-ps2-201ENSMUST00000091440 2277 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
Rnf40Q3U319 Slc22a30-202ENSMUST00000096269 2255 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
Rnf40Q3U319 Fgf14-202ENSMUST00000095529 3608 ntTSL 1 (best) BASIC6□□□□□ -1.45
Rnf40Q3U319 Fastkd1-201ENSMUST00000073152 2865 ntAPPRIS P2 TSL 1 (best) BASIC6□□□□□ -1.45
Rnf40Q3U319 Mir599-201ENSMUST00000102378 88 ntBASIC6□□□□□ -1.45
Rnf40Q3U319 Trav14d-2-201ENSMUST00000103597 276 ntAPPRIS P1 BASIC6□□□□□ -1.45
Rnf40Q3U319 Trav14n-2-201ENSMUST00000103623 276 ntAPPRIS P1 BASIC6□□□□□ -1.45
Rnf40Q3U319 Gm13714-201ENSMUST00000117313 221 ntBASIC6□□□□□ -1.45
Rnf40Q3U319 Gm16242-201ENSMUST00000117741 334 ntBASIC6□□□□□ -1.45
Rnf40Q3U319 Gm15618-201ENSMUST00000121610 452 ntBASIC6□□□□□ -1.45
Rnf40Q3U319 Gm24596-201ENSMUST00000122504 107 ntBASIC6□□□□□ -1.45
Rnf40Q3U319 Gm23887-201ENSMUST00000122683 172 ntBASIC6□□□□□ -1.45
Rnf40Q3U319 0610043K17Rik-202ENSMUST00000142581 372 ntTSL 2 BASIC6□□□□□ -1.45
Rnf40Q3U319 Scgn-202ENSMUST00000142826 470 ntTSL 5 BASIC6□□□□□ -1.45
Retrieved 100 of 76,532 protein–RNA pairs in 99.9 ms