Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Gm5898-201ENSMUST00000121016 2071 ntBASIC19.41■□□□□ 0.7
Ushbp1Q8R370 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Itgb1bp1-201ENSMUST00000076260 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ushbp1Q8R370 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Gm19439-201ENSMUST00000198195 2273 ntBASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Gm43183-201ENSMUST00000200632 547 ntBASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Gm10819-201ENSMUST00000099988 561 ntBASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Gm8668-201ENSMUST00000120559 1447 ntBASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Ushbp1Q8R370 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Ushbp1Q8R370 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
Ushbp1Q8R370 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Ushbp1Q8R370 AC125311.2-201ENSMUST00000227477 1940 ntBASIC19.39■□□□□ 0.7
Ushbp1Q8R370 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Gm10461-201ENSMUST00000202073 4786 ntBASIC19.39■□□□□ 0.69
Ushbp1Q8R370 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Ushbp1Q8R370 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Gm11973-203ENSMUST00000155498 867 ntTSL 3 BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Gm21362-201ENSMUST00000194272 928 ntBASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ushbp1Q8R370 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ushbp1Q8R370 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ushbp1Q8R370 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC19.36■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms