Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Mtag2-201ENSMUST00000058665 714 ntBASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vps53Q8CCB4 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
Vps53Q8CCB4 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Vps53Q8CCB4 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Vps53Q8CCB4 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Vps53Q8CCB4 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.82
Vps53Q8CCB4 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Gm38285-201ENSMUST00000192928 922 ntBASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Gm43183-201ENSMUST00000200632 547 ntBASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Zfp783-201ENSMUST00000095946 670 ntBASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Zcchc6-207ENSMUST00000225576 2499 ntBASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Vps53Q8CCB4 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Gm21814-202ENSMUST00000203277 873 ntBASIC20.13■□□□□ 0.81
Vps53Q8CCB4 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Gm10138-203ENSMUST00000206952 366 ntBASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Vps53Q8CCB4 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 AC124581.1-201ENSMUST00000225416 1399 ntBASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Gm30025-201ENSMUST00000218555 728 ntBASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Vps53Q8CCB4 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Idnk-204ENSMUST00000226010 1898 ntBASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Slc5a10-201ENSMUST00000051552 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Gm42900-201ENSMUST00000197184 2167 ntBASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC20.11■□□□□ 0.81
Vps53Q8CCB4 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Gm43702-201ENSMUST00000198772 2546 ntBASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Best2-203ENSMUST00000209421 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Arhgef4-208ENSMUST00000211073 171 ntBASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vps53Q8CCB4 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms