Protein–RNA interactions for Protein: Q8BGE6

Atg4b, Cysteine protease ATG4B, mousemouse

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Atg4bQ8BGE6 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Gm24841-201ENSMUST00000158676 357 ntBASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Atg4bQ8BGE6 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Gm715-201ENSMUST00000117865 831 ntBASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Gm42900-201ENSMUST00000197184 2167 ntBASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Atg4bQ8BGE6 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Gm16042-201ENSMUST00000204813 1247 ntBASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Arhgef33-211ENSMUST00000225658 473 ntBASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Atg4bQ8BGE6 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Gm12085-201ENSMUST00000119263 940 ntBASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Gm13181-201ENSMUST00000120117 1069 ntBASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Sqstm1-205ENSMUST00000143379 1266 ntTSL 5 BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Atg4bQ8BGE6 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Atg4bQ8BGE6 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC16.27■□□□□ 0.2
Atg4bQ8BGE6 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Atg4bQ8BGE6 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
Atg4bQ8BGE6 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC16.27■□□□□ 0.2
Atg4bQ8BGE6 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Atg4bQ8BGE6 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
Atg4bQ8BGE6 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Atg4bQ8BGE6 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Atg4bQ8BGE6 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
Atg4bQ8BGE6 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Atg4bQ8BGE6 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms