Protein–RNA interactions for Protein: P02831

Hoxa3, Homeobox protein Hox-A3, mousemouse

Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxa3P02831 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Hoxa3P02831 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Hoxa3P02831 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Hoxa3P02831 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Hoxa3P02831 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Hoxa3P02831 Gm10231-201ENSMUST00000181584 441 ntBASIC14.52□□□□□ -0.09
Hoxa3P02831 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Hoxa3P02831 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Hoxa3P02831 Gm10175-202ENSMUST00000208752 441 ntBASIC14.52□□□□□ -0.09
Hoxa3P02831 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Hoxa3P02831 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Hoxa3P02831 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Hoxa3P02831 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Hoxa3P02831 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Hoxa3P02831 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Hoxa3P02831 Ddx41-204ENSMUST00000224765 2199 ntBASIC14.51□□□□□ -0.09
Hoxa3P02831 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Hoxa3P02831 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Hoxa3P02831 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Hoxa3P02831 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC14.51□□□□□ -0.09
Hoxa3P02831 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Hoxa3P02831 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Hoxa3P02831 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Hoxa3P02831 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC14.5□□□□□ -0.09
Hoxa3P02831 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Gm12085-201ENSMUST00000119263 940 ntBASIC14.5□□□□□ -0.09
Hoxa3P02831 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC14.5□□□□□ -0.09
Hoxa3P02831 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC14.5□□□□□ -0.09
Hoxa3P02831 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
Hoxa3P02831 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC14.5□□□□□ -0.09
Hoxa3P02831 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC14.5□□□□□ -0.09
Hoxa3P02831 AC121577.1-201ENSMUST00000227302 707 ntBASIC14.5□□□□□ -0.09
Hoxa3P02831 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Hoxa3P02831 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Hoxa3P02831 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC14.49□□□□□ -0.09
Hoxa3P02831 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
Hoxa3P02831 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
Hoxa3P02831 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Gm13401-201ENSMUST00000117074 291 ntBASIC14.49□□□□□ -0.09
Hoxa3P02831 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Hoxa3P02831 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxa3P02831 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxa3P02831 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxa3P02831 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxa3P02831 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
Hoxa3P02831 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxa3P02831 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxa3P02831 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxa3P02831 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxa3P02831 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxa3P02831 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxa3P02831 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
Hoxa3P02831 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC14.48□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms