Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm14027-201ENSMUST00000135186 622 ntTSL 3 BASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm23513-201ENSMUST00000158181 133 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm15689-201ENSMUST00000160604 1159 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm23799-201ENSMUST00000175559 120 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 RMST_1.1-201ENSMUST00000182623 407 ntTSL 2 BASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm28283-201ENSMUST00000185509 178 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm28058-201ENSMUST00000186421 264 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm34068-201ENSMUST00000193310 632 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm45173-201ENSMUST00000206819 305 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm44927-201ENSMUST00000207573 716 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm2446-201ENSMUST00000220144 772 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 AC159621.1-201ENSMUST00000223249 163 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 AC158142.1-201ENSMUST00000226721 416 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 AC158142.2-201ENSMUST00000227892 635 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 Olfr178-201ENSMUST00000058564 960 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm25141-201ENSMUST00000083177 107 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 Nfyc-202ENSMUST00000097906 1008 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Trim56Q80VI1 Zfp143-202ENSMUST00000169638 2914 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm18432-201ENSMUST00000195568 1451 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 Pkhd1-201ENSMUST00000088448 12935 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Trim56Q80VI1 Gm37195-201ENSMUST00000192006 3018 ntBASIC5.69□□□□□ -1.5
Trim56Q80VI1 4933434E20Rik-201ENSMUST00000029551 3097 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Scn9a-206ENSMUST00000164384 7530 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Arpp19-203ENSMUST00000166549 1747 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm44144-201ENSMUST00000203683 1960 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 AC154627.2-201ENSMUST00000227028 4669 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm15560-201ENSMUST00000117107 643 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm11781-201ENSMUST00000118328 472 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm13475-201ENSMUST00000119290 234 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm5060-201ENSMUST00000120072 599 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm23124-201ENSMUST00000157650 107 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm25714-201ENSMUST00000158626 296 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm20656-201ENSMUST00000176925 518 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm20674-201ENSMUST00000177452 369 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm21094-201ENSMUST00000177842 498 ntTSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm20837-201ENSMUST00000178446 498 ntTSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm21739-201ENSMUST00000178639 498 ntTSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm28891-201ENSMUST00000178751 498 ntTSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm8247-202ENSMUST00000178759 375 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm28490-201ENSMUST00000179076 498 ntTSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm21861-201ENSMUST00000179480 498 ntTSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm21256-201ENSMUST00000179672 498 ntTSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm20838-201ENSMUST00000179884 498 ntTSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm23144-201ENSMUST00000180226 107 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm21679-201ENSMUST00000180373 498 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm4832-202ENSMUST00000183295 375 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Mir6382-201ENSMUST00000184055 110 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm2950-201ENSMUST00000185530 520 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm29064-201ENSMUST00000187014 813 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Ly6a-203ENSMUST00000187171 853 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm29423-207ENSMUST00000189580 255 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Crs-ps-201ENSMUST00000203723 760 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm7692-201ENSMUST00000213534 409 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 AC166358.10-201ENSMUST00000220556 144 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Olfr131-201ENSMUST00000059560 1030 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Olfr1458-201ENSMUST00000076729 906 ntAPPRIS ALT2 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Olfr1168-201ENSMUST00000079599 939 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm25140-201ENSMUST00000083254 140 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm22826-201ENSMUST00000083774 165 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gm24031-201ENSMUST00000083930 131 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 AA792892-201ENSMUST00000097477 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Fbxw24-201ENSMUST00000073962 1488 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Fap-202ENSMUST00000102732 2751 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Kcnu1-201ENSMUST00000098858 3536 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Brcc3-202ENSMUST00000114074 2473 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
Trim56Q80VI1 2810428J06Rik-201ENSMUST00000198336 2696 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Glyat-202ENSMUST00000119960 3296 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Cnot4-203ENSMUST00000114993 3473 ntAPPRIS P4 TSL 1 (best) BASIC5.68□□□□□ -1.5
Trim56Q80VI1 AC125532.1-201ENSMUST00000216210 2334 ntBASIC5.68□□□□□ -1.5
Trim56Q80VI1 Olfr1191-ps1-201ENSMUST00000120598 4677 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
Trim56Q80VI1 Gabra6-202ENSMUST00000109286 1554 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Clk4-203ENSMUST00000109113 1627 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Fam135a-206ENSMUST00000187369 4976 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm37749-201ENSMUST00000193917 1899 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Sri-202ENSMUST00000088786 2504 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Dcun1d1-203ENSMUST00000178098 4434 ntTSL 5 BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gria2-201ENSMUST00000075316 10371 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Ighv1-36-201ENSMUST00000103513 348 ntAPPRIS ALT2 BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm14001-201ENSMUST00000118847 247 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Rps10-ps3-201ENSMUST00000122317 500 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm3362-201ENSMUST00000148102 466 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm16060-201ENSMUST00000153140 478 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm26034-201ENSMUST00000158154 116 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm8649-201ENSMUST00000181799 233 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm26871-205ENSMUST00000181926 742 ntTSL 3 BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm28008-201ENSMUST00000184021 186 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm18505-201ENSMUST00000187360 790 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Mrgprb1-202ENSMUST00000188095 472 ntTSL 3 BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm18357-201ENSMUST00000188184 580 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm2077-201ENSMUST00000195017 319 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm42694-201ENSMUST00000196951 358 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm29793-201ENSMUST00000202874 460 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm45459-201ENSMUST00000209882 442 ntTSL 5 BASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm8158-201ENSMUST00000219220 465 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Gm8112-201ENSMUST00000219637 465 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 4930555G07Rik-202ENSMUST00000219879 750 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
Trim56Q80VI1 AC121804.2-201ENSMUST00000222531 316 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
Trim56Q80VI1 AC154657.1-201ENSMUST00000226394 775 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 AC120553.1-201ENSMUST00000227313 260 ntBASIC5.67□□□□□ -1.5
Trim56Q80VI1 Sprr2f-201ENSMUST00000050397 609 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 76,532 protein–RNA pairs in 81.8 ms