Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Prpf40aQ9R1C7 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Prpf40aQ9R1C7 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC19.09■□□□□ 0.65
Prpf40aQ9R1C7 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Prpf40aQ9R1C7 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Prpf40aQ9R1C7 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Prpf40aQ9R1C7 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Prpf40aQ9R1C7 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Prpf40aQ9R1C7 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
Prpf40aQ9R1C7 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Prpf40aQ9R1C7 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Prpf40aQ9R1C7 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Prpf40aQ9R1C7 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Prpf40aQ9R1C7 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Prpf40aQ9R1C7 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Prpf40aQ9R1C7 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Prpf40aQ9R1C7 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Prpf40aQ9R1C7 Gm29791-202ENSMUST00000207888 369 ntBASIC19.08■□□□□ 0.64
Prpf40aQ9R1C7 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Prpf40aQ9R1C7 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Prpf40aQ9R1C7 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
Prpf40aQ9R1C7 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Prpf40aQ9R1C7 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Prpf40aQ9R1C7 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Prpf40aQ9R1C7 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 AC121598.2-201ENSMUST00000228376 2325 ntBASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Gm10698-201ENSMUST00000182663 604 ntBASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Prpf40aQ9R1C7 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Gm42545-201ENSMUST00000202755 922 ntBASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Prpf40aQ9R1C7 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Prpf40aQ9R1C7 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms