Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
Ddx56Q9D0R4 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ddx56Q9D0R4 CT010444.2-201ENSMUST00000217877 1629 ntBASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Gm8520-201ENSMUST00000186517 868 ntBASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Rpl18a-206ENSMUST00000212709 700 ntTSL 2 BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ddx56Q9D0R4 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Crct1-202ENSMUST00000107301 460 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Tia1-203ENSMUST00000095754 1789 ntAPPRIS ALT1 TSL 5 BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ddx56Q9D0R4 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx56Q9D0R4 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx56Q9D0R4 Prps1l3-201ENSMUST00000139049 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx56Q9D0R4 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx56Q9D0R4 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx56Q9D0R4 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx56Q9D0R4 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx56Q9D0R4 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ddx56Q9D0R4 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Gm5898-201ENSMUST00000121016 2071 ntBASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ddx56Q9D0R4 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Fbrsl1-206ENSMUST00000198834 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Ddx56Q9D0R4 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms