Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Ushbp1Q8R370 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Gm43272-201ENSMUST00000200599 1584 ntBASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Gm6598-201ENSMUST00000202719 2615 ntBASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Ushbp1Q8R370 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Gm45560-201ENSMUST00000211492 1472 ntBASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Grina-201ENSMUST00000023225 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Ushbp1Q8R370 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Ushbp1Q8R370 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ushbp1Q8R370 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ushbp1Q8R370 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ushbp1Q8R370 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC19.43■□□□□ 0.7
Ushbp1Q8R370 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC19.43■□□□□ 0.7
Ushbp1Q8R370 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Ushbp1Q8R370 Gm43808-201ENSMUST00000202534 2065 ntBASIC19.43■□□□□ 0.7
Ushbp1Q8R370 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC19.43■□□□□ 0.7
Ushbp1Q8R370 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ushbp1Q8R370 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
Ushbp1Q8R370 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Ushbp1Q8R370 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Gm37519-201ENSMUST00000191687 2210 ntBASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Gm30025-201ENSMUST00000218555 728 ntBASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Smarca4-202ENSMUST00000098948 6376 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ushbp1Q8R370 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms