Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Zfp783-201ENSMUST00000095946 670 ntBASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nup88Q8CEC0 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Gm9954-202ENSMUST00000198686 4725 ntBASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Gm15565-201ENSMUST00000118890 427 ntBASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nup88Q8CEC0 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Gm43808-201ENSMUST00000202534 2065 ntBASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Nup88Q8CEC0 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nup88Q8CEC0 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nup88Q8CEC0 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Nup88Q8CEC0 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nup88Q8CEC0 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
Nup88Q8CEC0 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Nup88Q8CEC0 Mir5122-201ENSMUST00000175004 89 ntBASIC20.45■□□□□ 0.86
Nup88Q8CEC0 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC20.45■□□□□ 0.86
Nup88Q8CEC0 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nup88Q8CEC0 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC20.45■□□□□ 0.86
Nup88Q8CEC0 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Nup88Q8CEC0 Gm37519-201ENSMUST00000191687 2210 ntBASIC20.45■□□□□ 0.86
Nup88Q8CEC0 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 AC175538.1-201ENSMUST00000225343 1269 ntBASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Gm43548-201ENSMUST00000197139 2353 ntBASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Nup88Q8CEC0 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms