Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Gm20472-201ENSMUST00000174403 1240 ntBASIC20.44■□□□□ 0.86
Limch1Q3UH68 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Mir6349-201ENSMUST00000184059 97 ntBASIC20.44■□□□□ 0.86
Limch1Q3UH68 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Gm9987-201ENSMUST00000069768 567 ntBASIC20.44■□□□□ 0.86
Limch1Q3UH68 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Limch1Q3UH68 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Limch1Q3UH68 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Limch1Q3UH68 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Limch1Q3UH68 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Limch1Q3UH68 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Limch1Q3UH68 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Limch1Q3UH68 Gm19439-201ENSMUST00000198195 2273 ntBASIC20.43■□□□□ 0.86
Limch1Q3UH68 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Limch1Q3UH68 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Limch1Q3UH68 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Limch1Q3UH68 Gm10654-201ENSMUST00000098653 1633 ntBASIC20.42■□□□□ 0.86
Limch1Q3UH68 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Limch1Q3UH68 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Limch1Q3UH68 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Limch1Q3UH68 AC175538.1-201ENSMUST00000225343 1269 ntBASIC20.42■□□□□ 0.86
Limch1Q3UH68 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Limch1Q3UH68 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Limch1Q3UH68 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC20.42■□□□□ 0.86
Limch1Q3UH68 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Limch1Q3UH68 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Limch1Q3UH68 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
Limch1Q3UH68 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Gm5898-201ENSMUST00000121016 2071 ntBASIC20.41■□□□□ 0.86
Limch1Q3UH68 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Gm37519-201ENSMUST00000191687 2210 ntBASIC20.41■□□□□ 0.86
Limch1Q3UH68 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 AC153881.2-201ENSMUST00000214877 204 ntBASIC20.41■□□□□ 0.86
Limch1Q3UH68 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Limch1Q3UH68 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Gm13401-201ENSMUST00000117074 291 ntBASIC20.4■□□□□ 0.86
Limch1Q3UH68 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.4■□□□□ 0.86
Limch1Q3UH68 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Limch1Q3UH68 Gm43808-201ENSMUST00000202534 2065 ntBASIC20.39■□□□□ 0.86
Limch1Q3UH68 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Gm15375-201ENSMUST00000119510 849 ntBASIC20.39■□□□□ 0.85
Limch1Q3UH68 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Limch1Q3UH68 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Limch1Q3UH68 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Limch1Q3UH68 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
Limch1Q3UH68 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Limch1Q3UH68 Gm43272-201ENSMUST00000200599 1584 ntBASIC20.38■□□□□ 0.85
Limch1Q3UH68 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 61.1 ms