Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Col8a1Q00780 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
Col8a1Q00780 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Col8a1Q00780 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Col8a1Q00780 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
Col8a1Q00780 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC14.78□□□□□ -0.04
Col8a1Q00780 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Col8a1Q00780 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Col8a1Q00780 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
Col8a1Q00780 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Col8a1Q00780 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Col8a1Q00780 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col8a1Q00780 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col8a1Q00780 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
Col8a1Q00780 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col8a1Q00780 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col8a1Q00780 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col8a1Q00780 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Col8a1Q00780 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
Col8a1Q00780 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
Col8a1Q00780 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col8a1Q00780 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col8a1Q00780 Gm6623-201ENSMUST00000173570 544 ntBASIC14.77□□□□□ -0.05
Col8a1Q00780 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col8a1Q00780 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
Col8a1Q00780 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col8a1Q00780 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col8a1Q00780 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col8a1Q00780 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col8a1Q00780 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC14.77□□□□□ -0.05
Col8a1Q00780 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col8a1Q00780 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Col8a1Q00780 Gm5784-201ENSMUST00000179344 2478 ntBASIC14.76□□□□□ -0.05
Col8a1Q00780 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC14.76□□□□□ -0.05
Col8a1Q00780 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC14.76□□□□□ -0.05
Col8a1Q00780 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC14.76□□□□□ -0.05
Col8a1Q00780 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
Col8a1Q00780 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
Col8a1Q00780 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
Col8a1Q00780 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC14.76□□□□□ -0.05
Col8a1Q00780 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
Col8a1Q00780 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Col8a1Q00780 Gm13884-201ENSMUST00000118103 829 ntBASIC14.75□□□□□ -0.05
Col8a1Q00780 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC14.75□□□□□ -0.05
Col8a1Q00780 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC14.75□□□□□ -0.05
Col8a1Q00780 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC14.75□□□□□ -0.05
Col8a1Q00780 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC14.75□□□□□ -0.05
Col8a1Q00780 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 AC108858.1-201ENSMUST00000228461 1498 ntBASIC14.75□□□□□ -0.05
Col8a1Q00780 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
Col8a1Q00780 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
Col8a1Q00780 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC14.74□□□□□ -0.05
Col8a1Q00780 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col8a1Q00780 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col8a1Q00780 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col8a1Q00780 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col8a1Q00780 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col8a1Q00780 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
Col8a1Q00780 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC14.74□□□□□ -0.05
Retrieved 100 of 76,532 protein–RNA pairs in 100.6 ms