Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Sox3P53784 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Sox3P53784 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
Sox3P53784 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Sox3P53784 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
Sox3P53784 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC16.6■□□□□ 0.25
Sox3P53784 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC16.6■□□□□ 0.25
Sox3P53784 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Gm18025-201ENSMUST00000221733 862 ntBASIC16.6■□□□□ 0.25
Sox3P53784 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Sox3P53784 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC16.6■□□□□ 0.25
Sox3P53784 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Sox3P53784 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Sox3P53784 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Gm43548-201ENSMUST00000197139 2353 ntBASIC16.59■□□□□ 0.25
Sox3P53784 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
Sox3P53784 Hoxd4-201ENSMUST00000047904 2560 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
Sox3P53784 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
Sox3P53784 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC16.59■□□□□ 0.25
Sox3P53784 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC16.59■□□□□ 0.25
Sox3P53784 AC160393.1-201ENSMUST00000218378 1279 ntBASIC16.59■□□□□ 0.25
Sox3P53784 AC130713.1-201ENSMUST00000228853 1096 ntBASIC16.59■□□□□ 0.25
Sox3P53784 Mtag2-201ENSMUST00000058665 714 ntBASIC16.59■□□□□ 0.25
Sox3P53784 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Gm45906-201ENSMUST00000208911 1430 ntBASIC16.59■□□□□ 0.25
Sox3P53784 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC16.59■□□□□ 0.25
Sox3P53784 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Sox3P53784 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
Sox3P53784 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
Sox3P53784 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
Sox3P53784 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
Sox3P53784 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sox3P53784 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Sox3P53784 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Sox3P53784 Gm12382-201ENSMUST00000122005 922 ntBASIC16.58■□□□□ 0.24
Sox3P53784 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC16.58■□□□□ 0.24
Sox3P53784 Gm25925-201ENSMUST00000158314 306 ntBASIC16.58■□□□□ 0.24
Sox3P53784 Gm10138-203ENSMUST00000206952 366 ntBASIC16.58■□□□□ 0.24
Sox3P53784 Gm19094-201ENSMUST00000209791 1246 ntBASIC16.58■□□□□ 0.24
Sox3P53784 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
Sox3P53784 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sox3P53784 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sox3P53784 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sox3P53784 Gm5898-201ENSMUST00000121016 2071 ntBASIC16.58■□□□□ 0.24
Sox3P53784 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
Sox3P53784 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC16.58■□□□□ 0.24
Sox3P53784 Rnf169-201ENSMUST00000080817 7147 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
Sox3P53784 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.58■□□□□ 0.24
Sox3P53784 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
Sox3P53784 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC16.57■□□□□ 0.24
Sox3P53784 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC16.57■□□□□ 0.24
Sox3P53784 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC16.57■□□□□ 0.24
Sox3P53784 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
Sox3P53784 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Sox3P53784 Gm15635-204ENSMUST00000208024 2539 ntBASIC16.57■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms