Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Gm26039-201ENSMUST00000158152 144 ntBASIC14.6□□□□□ -0.07
Col6a4A2AX52 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Mrps18a-201ENSMUST00000024763 884 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Col6a4A2AX52 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Col6a4A2AX52 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Mir8098-201ENSMUST00000184011 137 ntBASIC14.59□□□□□ -0.07
Col6a4A2AX52 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Gm13401-201ENSMUST00000117074 291 ntBASIC14.59□□□□□ -0.07
Col6a4A2AX52 Gm27357-201ENSMUST00000183754 135 ntBASIC14.59□□□□□ -0.07
Col6a4A2AX52 AC120002.2-201ENSMUST00000220205 773 ntBASIC14.59□□□□□ -0.07
Col6a4A2AX52 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
Col6a4A2AX52 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col6a4A2AX52 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC14.58□□□□□ -0.07
Col6a4A2AX52 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Col6a4A2AX52 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Col6a4A2AX52 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Col6a4A2AX52 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Col6a4A2AX52 4930519L02Rik-201ENSMUST00000197683 619 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Gm43347-201ENSMUST00000200226 580 ntBASIC14.58□□□□□ -0.08
Col6a4A2AX52 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Gm2270-201ENSMUST00000222858 797 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC14.58□□□□□ -0.08
Col6a4A2AX52 Gm45328-201ENSMUST00000210942 917 ntBASIC14.58□□□□□ -0.08
Col6a4A2AX52 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a4A2AX52 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC14.57□□□□□ -0.08
Col6a4A2AX52 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Actl10-202ENSMUST00000226583 1501 ntBASIC14.57□□□□□ -0.08
Col6a4A2AX52 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
Col6a4A2AX52 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a4A2AX52 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Col6a4A2AX52 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Col6a4A2AX52 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col6a4A2AX52 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col6a4A2AX52 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col6a4A2AX52 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Col6a4A2AX52 Bex3-204ENSMUST00000178632 933 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms