Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Cpsf3Q9QXK7 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cpsf3Q9QXK7 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cpsf3Q9QXK7 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cpsf3Q9QXK7 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Cpsf3Q9QXK7 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Dnajb9-201ENSMUST00000015049 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Gm30025-201ENSMUST00000218555 728 ntBASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cpsf3Q9QXK7 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Shroom3-211ENSMUST00000225438 5742 ntBASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cpsf3Q9QXK7 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cpsf3Q9QXK7 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Cpsf3Q9QXK7 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cpsf3Q9QXK7 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cpsf3Q9QXK7 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cpsf3Q9QXK7 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cpsf3Q9QXK7 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Cpsf3Q9QXK7 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cpsf3Q9QXK7 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Cpsf3Q9QXK7 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Txnl4b-201ENSMUST00000034159 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Cpsf3Q9QXK7 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cpsf3Q9QXK7 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 A930001A20Rik-201ENSMUST00000182586 1366 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Gm11539-201ENSMUST00000119837 557 ntBASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Gm13436-201ENSMUST00000120418 567 ntBASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Gm43799-201ENSMUST00000201845 579 ntBASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cpsf3Q9QXK7 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 52.8 ms