Protein–RNA interactions for Protein: Q9DB34

Chmp2a, Charged multivesicular body protein 2a, mousemouse

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp2aQ9DB34 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Chmp2aQ9DB34 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Shank1-203ENSMUST00000107938 9826 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Chmp2aQ9DB34 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Gm10418-201ENSMUST00000100943 576 ntBASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Chmp2aQ9DB34 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Gm11643-201ENSMUST00000119578 864 ntBASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 C2cd4c-202ENSMUST00000178228 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Chmp2aQ9DB34 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Chmp2aQ9DB34 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Chmp2aQ9DB34 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Chmp2aQ9DB34 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2aQ9DB34 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2aQ9DB34 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2aQ9DB34 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2aQ9DB34 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Chmp2aQ9DB34 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms