Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Wt1-205ENSMUST00000143043 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Msh4Q99MT2 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msh4Q99MT2 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msh4Q99MT2 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msh4Q99MT2 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
Msh4Q99MT2 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.96■□□□□ 0.31
Msh4Q99MT2 Gm15378-201ENSMUST00000121894 207 ntBASIC16.96■□□□□ 0.31
Msh4Q99MT2 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Msh4Q99MT2 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msh4Q99MT2 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC16.96■□□□□ 0.31
Msh4Q99MT2 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msh4Q99MT2 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Msh4Q99MT2 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Msh4Q99MT2 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Msh4Q99MT2 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
Msh4Q99MT2 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Gm13181-201ENSMUST00000120117 1069 ntBASIC16.95■□□□□ 0.3
Msh4Q99MT2 Gm10138-203ENSMUST00000206952 366 ntBASIC16.95■□□□□ 0.3
Msh4Q99MT2 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msh4Q99MT2 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 AC121598.2-201ENSMUST00000228376 2325 ntBASIC16.94■□□□□ 0.3
Msh4Q99MT2 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msh4Q99MT2 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Gm10252-201ENSMUST00000209541 832 ntBASIC16.93■□□□□ 0.3
Msh4Q99MT2 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Msh4Q99MT2 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Gm5898-201ENSMUST00000121016 2071 ntBASIC16.92■□□□□ 0.3
Msh4Q99MT2 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC16.92■□□□□ 0.3
Msh4Q99MT2 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Gm15635-204ENSMUST00000208024 2539 ntBASIC16.92■□□□□ 0.3
Msh4Q99MT2 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 AC154649.1-201ENSMUST00000227392 384 ntBASIC16.92■□□□□ 0.3
Msh4Q99MT2 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msh4Q99MT2 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms