Protein–RNA interactions for Protein: Q8R4G9

Chrna3, Neuronal acetylcholine receptor subunit alpha-3, mousemouse

Predictions only

Length 499 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chrna3Q8R4G9 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 Cib1-202ENSMUST00000071457 702 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Chrna3Q8R4G9 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Gm16120-201ENSMUST00000127990 808 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Gm30025-201ENSMUST00000218555 728 ntBASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Chrna3Q8R4G9 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Usp49-201ENSMUST00000024779 8252 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Chrna3Q8R4G9 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Chrna3Q8R4G9 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Gm38027-201ENSMUST00000192315 235 ntBASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Grk6-206ENSMUST00000224995 2971 ntBASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Chrna3Q8R4G9 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 33.7 ms