Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Idnk-204ENSMUST00000226010 1898 ntBASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Ewsr1-203ENSMUST00000079949 2588 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Sh3rf1Q69ZI1 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sh3rf1Q69ZI1 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Sh3rf1Q69ZI1 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sh3rf1Q69ZI1 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Sh3rf1Q69ZI1 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sh3rf1Q69ZI1 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sh3rf1Q69ZI1 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Sh3rf1Q69ZI1 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
Sh3rf1Q69ZI1 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Gm45774-201ENSMUST00000211992 2665 ntBASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Sh3rf1Q69ZI1 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Hivep3-201ENSMUST00000084306 2973 ntBASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Ric3-202ENSMUST00000120876 1633 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Sh3rf1Q69ZI1 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Gm5643-201ENSMUST00000117081 966 ntBASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Dio3-201ENSMUST00000097228 1449 ntBASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Sh3rf1Q69ZI1 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Asph-204ENSMUST00000084915 2884 ntTSL 5 BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Sh3rf1Q69ZI1 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Sh3rf1Q69ZI1 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 43.3 ms