Protein–RNA interactions for Protein: Q62205

Scn9a, Sodium channel protein type 9 subunit alpha, mousemouse

Predictions only

Length 1,984 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn9aQ62205 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn9aQ62205 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Scn9aQ62205 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Scn9aQ62205 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn9aQ62205 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Scn9aQ62205 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC20.57■□□□□ 0.88
Scn9aQ62205 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC20.57■□□□□ 0.88
Scn9aQ62205 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn9aQ62205 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Scn9aQ62205 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn9aQ62205 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC20.56■□□□□ 0.88
Scn9aQ62205 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn9aQ62205 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
Scn9aQ62205 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Scn9aQ62205 Gm37935-201ENSMUST00000192012 982 ntBASIC20.56■□□□□ 0.88
Scn9aQ62205 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC20.56■□□□□ 0.88
Scn9aQ62205 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn9aQ62205 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn9aQ62205 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn9aQ62205 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC20.56■□□□□ 0.88
Scn9aQ62205 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn9aQ62205 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Scn9aQ62205 AC154855.1-201ENSMUST00000227353 1458 ntBASIC20.56■□□□□ 0.88
Scn9aQ62205 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn9aQ62205 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Scn9aQ62205 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn9aQ62205 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC20.56■□□□□ 0.88
Scn9aQ62205 Tubb4b-ps1-201ENSMUST00000179460 1336 ntBASIC20.56■□□□□ 0.88
Scn9aQ62205 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Scn9aQ62205 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC20.56■□□□□ 0.88
Scn9aQ62205 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Scn9aQ62205 Nat9-203ENSMUST00000103040 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn9aQ62205 Nat9-204ENSMUST00000103041 953 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Scn9aQ62205 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC20.55■□□□□ 0.88
Scn9aQ62205 1600014C10Rik-209ENSMUST00000179992 568 ntTSL 3 BASIC20.55■□□□□ 0.88
Scn9aQ62205 Gm43073-201ENSMUST00000198200 1189 ntBASIC20.55■□□□□ 0.88
Scn9aQ62205 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC20.55■□□□□ 0.88
Scn9aQ62205 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn9aQ62205 Gm18206-201ENSMUST00000207027 926 ntBASIC20.55■□□□□ 0.88
Scn9aQ62205 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC20.55■□□□□ 0.88
Scn9aQ62205 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC20.55■□□□□ 0.88
Scn9aQ62205 AC122351.1-201ENSMUST00000220467 126 ntBASIC20.55■□□□□ 0.88
Scn9aQ62205 AC125350.1-201ENSMUST00000225115 903 ntBASIC20.55■□□□□ 0.88
Scn9aQ62205 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn9aQ62205 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Scn9aQ62205 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Scn9aQ62205 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn9aQ62205 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn9aQ62205 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Scn9aQ62205 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Scn9aQ62205 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC20.54■□□□□ 0.88
Scn9aQ62205 Ptcra-201ENSMUST00000041012 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn9aQ62205 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn9aQ62205 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn9aQ62205 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Scn9aQ62205 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn9aQ62205 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Scn9aQ62205 Tubg1-201ENSMUST00000043680 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn9aQ62205 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn9aQ62205 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn9aQ62205 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn9aQ62205 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Scn9aQ62205 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC20.53■□□□□ 0.88
Scn9aQ62205 Gmnn-202ENSMUST00000110382 963 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn9aQ62205 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn9aQ62205 Gm11452-201ENSMUST00000122376 690 ntBASIC20.53■□□□□ 0.88
Scn9aQ62205 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Scn9aQ62205 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn9aQ62205 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn9aQ62205 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC20.52■□□□□ 0.88
Scn9aQ62205 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC20.52■□□□□ 0.88
Scn9aQ62205 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.52■□□□□ 0.88
Scn9aQ62205 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC20.52■□□□□ 0.88
Scn9aQ62205 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn9aQ62205 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn9aQ62205 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn9aQ62205 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.88
Scn9aQ62205 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Scn9aQ62205 Sh3yl1-202ENSMUST00000110880 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Scn9aQ62205 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Scn9aQ62205 Kctd14-202ENSMUST00000121987 1210 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Scn9aQ62205 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC20.52■□□□□ 0.87
Scn9aQ62205 Gm2651-201ENSMUST00000203560 838 ntBASIC20.52■□□□□ 0.87
Scn9aQ62205 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Scn9aQ62205 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Scn9aQ62205 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC20.52■□□□□ 0.87
Scn9aQ62205 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn9aQ62205 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Scn9aQ62205 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn9aQ62205 Nipsnap3b-201ENSMUST00000015391 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn9aQ62205 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Scn9aQ62205 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn9aQ62205 Gm44618-201ENSMUST00000208431 2262 ntTSL 3 BASIC20.51■□□□□ 0.87
Scn9aQ62205 Gm19721-201ENSMUST00000195284 1764 ntBASIC20.51■□□□□ 0.87
Scn9aQ62205 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Scn9aQ62205 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC20.51■□□□□ 0.87
Scn9aQ62205 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Scn9aQ62205 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC20.51■□□□□ 0.87
Scn9aQ62205 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Scn9aQ62205 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 20.2 ms