Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Gm6365-201ENSMUST00000054711 744 ntBASIC16.93■□□□□ 0.3
Col28a1Q2UY11 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Gm20517-202ENSMUST00000132397 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Elac2-202ENSMUST00000101049 2884 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col28a1Q2UY11 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Gm13534-201ENSMUST00000121169 513 ntBASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Gm8520-201ENSMUST00000186517 868 ntBASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Gm5408-201ENSMUST00000197998 747 ntBASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Gm43859-201ENSMUST00000200075 1412 ntBASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Glcci1-201ENSMUST00000064285 6200 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Prrt4-201ENSMUST00000159200 3411 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col28a1Q2UY11 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col28a1Q2UY11 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col28a1Q2UY11 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col28a1Q2UY11 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col28a1Q2UY11 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col28a1Q2UY11 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col28a1Q2UY11 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col28a1Q2UY11 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col28a1Q2UY11 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC16.9■□□□□ 0.3
Col28a1Q2UY11 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col28a1Q2UY11 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col28a1Q2UY11 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
Col28a1Q2UY11 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Col28a1Q2UY11 Vps53-202ENSMUST00000094015 2645 ntTSL 5 BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Gm7290-201ENSMUST00000104990 617 ntBASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Gm12918-201ENSMUST00000120234 636 ntBASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Gm15710-201ENSMUST00000121821 636 ntBASIC16.89■□□□□ 0.29
Col28a1Q2UY11 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Gm5075-201ENSMUST00000196916 622 ntBASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col28a1Q2UY11 Gm28265-201ENSMUST00000188201 2319 ntBASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Col28a1Q2UY11 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms