Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Shroom3Q9QXN0 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
Shroom3Q9QXN0 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Shroom3Q9QXN0 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Shroom3Q9QXN0 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
Shroom3Q9QXN0 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Shroom3Q9QXN0 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Shroom3Q9QXN0 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Gm21814-202ENSMUST00000203277 873 ntBASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
Shroom3Q9QXN0 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Shroom3Q9QXN0 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Vac14-201ENSMUST00000034190 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Tmem125-201ENSMUST00000060214 1864 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Tbx20-202ENSMUST00000166018 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Shroom3Q9QXN0 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Mir8112-201ENSMUST00000184382 131 ntBASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Gm3375-201ENSMUST00000203929 796 ntBASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Birc5-201ENSMUST00000081387 947 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Shroom3Q9QXN0 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Shroom3Q9QXN0 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shroom3Q9QXN0 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Shroom3Q9QXN0 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shroom3Q9QXN0 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Shroom3Q9QXN0 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Shroom3Q9QXN0 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shroom3Q9QXN0 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shroom3Q9QXN0 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shroom3Q9QXN0 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.54■□□□□ 0.4
Shroom3Q9QXN0 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Shroom3Q9QXN0 Gm10819-201ENSMUST00000099988 561 ntBASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.53■□□□□ 0.4
Shroom3Q9QXN0 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms